PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g08810.4

Common Name

LR48_Vigan03g082800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 493aa MW: 55292.3 Da PI: 4.813

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g08810.4	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	122.3	6e-38	124	491	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL + ea+++g+++la+ +L +s+ asp g++++Rl++y+ + + ++ l+ ++ + + aal+++++ P+ k++h++ Vang04g08810.4 124 HLLEAHGEALEQGQKSLAEVILRCMSQKASPLGESLERLVFYLSQSMTNHGDY--------LKGEAFK-----NYEAALRALYQGLPVGKVAHFA 205 67778889********************************99999887665........5555554.....45568899********** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak 184 a +aIlea+ ++ + vHi+D +++G+QW+++++a+a + ++++T ++ + g + eet+++L ++A+++g++++ + k Vang04g08810.4 206 AVSAILEAMPQDcNSVHIVDSCVGHGFQWVPMIEAIAHMN---KTVKLTSIKWDDDGeglecfsTPSNFEETKRQLCEYAKSCGLKLKVEE---K 294 *****9888********************965...56***9887799999988999***************9987...4 PP GRAS 185 rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadh...nsesFlerflealeyysal 267 +++l e+++++ + gE la n+++ l ++ +es + e++++ +l + ++++ + a n+ +F f le+y al Vang04g08810.4 295 GVKELvaEIKKMNKRGgrGEFLAFNSMIDLPHMGRESSRKQA--LEFVRVAEDLintsgNRGIITFGDGSAYEkvkNNLNFRSFFKAHLEHYQAL 387 455542245555444477***********966655555..77888777764443355699999977432235999************ PP GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslv 359 ++++e+ +p+ e+ri +E+ +l++ i+++ ++ e ++++ e Fk +ls+++ ++++ +l + s r+e +++++lv Vang04g08810.4 388 LEAIESHFPTRFsEARIAMEQLFLQPCISSLDWLQTWE------EMHSGDPLEAEISFKGCQLSKNILMEIREVLGGSEgSYQARIEgQNHNELV 476 ***998755***********9998888877......2333344446788*****************96666788878899* PP GRAS 360 lgWkdrpLvsvSaWr 374 l k+ +L+ +S W+ Vang04g08810.4 477 LEYKGTQLLRFSTWK 491 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.291	96	469	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.1E-35	124	491	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
LLSTLEDSTS EISSIPFSSS SLFFSNDHVH TQYPINEETL QLPSLMEFDD FDSIMDTEIA 60 SIQGHGYIWE SEGSFFPPQN LSSEVENAWS PTPSVRSELS TNQASPLTLP HQNMEIENQV 120 SLPHLLEAHG EALEQGQKSL AEVILRCMSQ KASPLGESLE RLVFYLSQSM TNHGDYLKGE 180 AFKNYEAALR ALYQGLPVGK VAHFAAVSAI LEAMPQDCNS VHIVDSCVGH GFQWVPMIEA 240 IAHMNKTVKL TSIKWDDDGE GLECFSTPSN FEETKRQLCE YAKSCGLKLK VEEKGVKELV 300 AEIKKMNKRG GRGEFLAFNS MIDLPHMGRE SSRKQALEFV RVAEDLINTS GNRGIITFGD 360 GSAYEKVKNN LNFRSFFKAH LEHYQALLEA IESHFPTRFS EARIAMEQLF LQPCISSLDW 420 LQTWEEMHSG DPLEAEISFK GCQLSKNILM EIREVLGGSE GSYQARIEGQ NHNELVLEYK 480 GTQLLRFSTW KN*

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

LLSTLEDSTS EISSIPFSSS SLFFSNDHVH TQYPINEETL QLPSLMEFDD FDSIMDTEIA  60
SIQGHGYIWE SEGSFFPPQN LSSEVENAWS PTPSVRSELS TNQASPLTLP HQNMEIENQV  120
SLPHLLEAHG EALEQGQKSL AEVILRCMSQ KASPLGESLE RLVFYLSQSM TNHGDYLKGE  180
AFKNYEAALR ALYQGLPVGK VAHFAAVSAI LEAMPQDCNS VHIVDSCVGH GFQWVPMIEA  240
IAHMNKTVKL TSIKWDDDGE GLECFSTPSN FEETKRQLCE YAKSCGLKLK VEEKGVKELV  300
AEIKKMNKRG GRGEFLAFNS MIDLPHMGRE SSRKQALEFV RVAEDLINTS GNRGIITFGD  360
GSAYEKVKNN LNFRSFFKAH LEHYQALLEA IESHFPTRFS EARIAMEQLF LQPCISSLDW  420
LQTWEEMHSG DPLEAEISFK GCQLSKNILM EIREVLGGSE GSYQARIEGQ NHNELVLEYK  480
GTQLLRFSTW KN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g08810.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417857.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0L9U3V4	0.0	A0A0L9U3V4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RU11	0.0	A0A0S3RU11_PHAAN; Uncharacterized protein
STRING	XP_007140222.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-12	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]