PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g10050.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 130aa    MW: 14674.1 Da    PI: 10.0675
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g10050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR124.77.5e-08385890
            FAR1  8 kevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                    +++GF v++ +s       g+ t   + C ++gk ++ k +     +   + +++C  +lk k  +  ++w+++ +  +HnHela
  Vang04g10050.1  3 YDLGFVVVIVRSDIAtGVRGRKTFVILGCERWGKYRKYKAD--VVASVYDTRKCECSFRLKGKPCSdGARWVLKVMCGHHNHELA 85
                    6789999998887762455556666667******9999888..344444455566666666666567899*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-5385IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MTYDLGFVVV IVRSDIATGV RGRKTFVILG CERWGKYRKY KADVVASVYD TRKCECSFRL  60
KGKPCSDGAR WVLKVMCGHH NHELAETLVG HPYAGRLNTS EKSLLVDMTR SKVTPANILL  120
TLKQNNDRNV
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g10050.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416591.12e-86PREDICTED: uncharacterized protein LOC108327394
TrEMBLA0A0S3S7D47e-75A0A0S3S7D4_PHAAN; Uncharacterized protein (Fragment)
TrEMBLA0A1S3U3881e-72A0A1S3U388_VIGRR; PKS-NRPS hybrid synthetase CHGG_01239-like
TrEMBLA0A3Q0F1V66e-73A0A3Q0F1V6_VIGRR; protein FAR1-RELATED SEQUENCE 5-like
STRINGGLYMA09G34850.11e-37(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1801122