PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g10540.1
Common NameLR48_Vigan03g122300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 223aa    MW: 25155.5 Da    PI: 9.7068
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g10540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-11109150351
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                      +GV++  k+ +W A I++      +k+++lg+ g+ eeAa ++++a+ 
  Vang04g10540.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAAHLYDRAAF 150
                     79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-5108151IPR001471AP2/ERF domain
SMARTSM003805.0E-4108165IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-8109153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-6111159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVSLRRRRLL GLCSGNSSFV TPLPLYCENL SSLENSTQQA KPKSEQPVLS DDASNLDSNT  60
AVLEEPGSSN VSGSSSSKEQ LIQPITGPPI KRRKRHRRKN LHNQEPCLMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AAHLYDRAAF MCGREPNFEL PEEEKRELSK FKWDDFLAMT  180
RQAITRKKHK RRLSPGPGNS HDMLPLPKDD WDSKQGVSED AE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185192RKKHKRRL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g10540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909351e-177BT090935.1 Soybean clone JCVI-FLGm-5P23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416170.11e-166PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP92e-45ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0L9U4Y11e-164A0A0L9U4Y1_PHAAN; Uncharacterized protein
STRINGXP_007140664.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54573253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.12e-47ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]