PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g11540.1
Common NameLR48_Vigan03g134300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 93aa    MW: 10683.2 Da    PI: 7.1335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g11540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.0001214581455
                    HHHHHHHHHHHCTSCC.C.....TTS-STCHHHHHHHHHHHHHHH CS
             HLH 14 driNsafeeLrellPk.as..kapskKlsKaeiLekAveYIksLq 55
                    ++iN+  ++L+ llP+ +   + +      + iL++++ +I+ Lq
  Vang04g11540.1 14 NEINDLVSRLQLLLPQiNQrdNSRVCPSPASKILKETCCHIRRLQ 58
                    68**************8875444444466778************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.1E-61475IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-71478IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MSGRRSRASK FSQNEINDLV SRLQLLLPQI NQRDNSRVCP SPASKILKET CCHIRRLQEE  60
VEQLSEKLSE LMDSVDMNDI DRQILQNILQ QC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g11540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150378e-81AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140557.12e-50hypothetical protein PHAVU_008G122600g
TrEMBLA0A0L9U5C83e-51A0A0L9U5C8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RUW53e-51A0A0S3RUW5_PHAAN; Uncharacterized protein
STRINGXP_007140557.19e-50(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106242439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.17e-19bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]