PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g11970.1
Common NameLR48_Vigan03g159300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 600aa    MW: 66533.6 Da    PI: 6.1631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g11970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.21.7e-972435982374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +   ++++ s+t       ++ a+k fse+sP+l+f+++
  Vang04g11970.1 243 TEQLFKAAELIDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQLGLHS--NANNSSMTFSPT---GLLLKIGAYKSFSEISPVLQFANF 332
                     689***************************************************..333333444444...4999******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT+++sp++ ++ el+ t+e+L+++A e++++fe ++l  ++l++   
  Vang04g11970.1 333 TCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHYDEIELSFTRENLKQYAGEINMSFELEILSFESLNSA-S 426
                     ************************************************************************************966666666.4 PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikv 285
                     +   ++  Ea++Vn+ +  ++ +      +s+ +  L++vk+l Pkvvv  ++ +d+++++F +++  al+ ys l++sl ++++  + +  +++
  Vang04g11970.1 427 WPQPLRDCEAVVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFALQSYSGLLESLdAVNV--HPDVLQMI 513
                     4446799**********988887......777788*********************************************55554..5578899* PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ +l+++ +++v  ++      +e+  +W++ l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr
  Vang04g11970.1 514 EKYYLQPAMEKLVLGRHGF----KERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLISVSTWR 598
                     *************987776....68888************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.569216578IPR005202Transcription factor GRAS
PfamPF035146.0E-95243598IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
LSESSAQDNS ILKLIMGDIE DPSMGLTKLL QGGSASQDVE FNGVGVGFSL VDQSSVLDPI  60
PSVNFNCSDF PFNSHSNVNS NISRVGSGVN PPNHGFPDSA SNLSPVSLSQ GVFQPQQQHP  120
AIEPLDEKLQ VLNPQFILNQ NQAQFMANPG SVLPLNYAQL QEHHQLLPQP PAKRLNCGPN  180
YQVPKAPFLD SGQELLLRRQ QQQLQLLPHH LLQRSSMLVA PKQKMASPSG EDLATHQLQQ  240
AITEQLFKAA ELIDAGNLEL AHGILARLNH QLSPFGRPFQ RAAFYFKEAL QLGLHSNANN  300
SSMTFSPTGL LLKIGAYKSF SEISPVLQFA NFTCNQALLE AVEGFDRIHI IDFDIGFGGQ  360
WSSFMQELAL RNGGAPELRI TAFVSPSHYD EIELSFTREN LKQYAGEINM SFELEILSFE  420
SLNSASWPQP LRDCEAVVVN MPIGSFSSYP SYLPLALRFV KQLMPKVVVT LDRSCDRTDA  480
PFPQHLNFAL QSYSGLLESL DAVNVHPDVL QMIEKYYLQP AMEKLVLGRH GFKERTLSWK  540
NLLLSSGFSP LTFSNFTESQ AECLVQRTPG KGFHVEKRQS SLVLCWQRKD LISVSTWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-3024859725378Protein SCARECROW
5b3h_A3e-3024859724377Protein SCARECROW
5b3h_D3e-3024859724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g11970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418938.10.0PREDICTED: scarecrow-like protein 22
RefseqXP_017418939.10.0PREDICTED: scarecrow-like protein 22
SwissprotO813161e-139SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0L9U6140.0A0A0L9U614_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVM10.0A0A0S3RVM1_PHAAN; Uncharacterized protein
STRINGXP_007140802.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-126GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]