PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g11970.3
Common NameLR48_Vigan03g159300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 742aa    MW: 81222.8 Da    PI: 5.8175
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g11970.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS317.43e-973857402374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +   ++++ s+t       ++ a+k fse+sP+l+f+++
  Vang04g11970.3 385 TEQLFKAAELIDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQLGLHS--NANNSSMTFSPT---GLLLKIGAYKSFSEISPVLQFANF 474
                     689***************************************************..333333444444...4999******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT+++sp++ ++ el+ t+e+L+++A e++++fe ++l  ++l++   
  Vang04g11970.3 475 TCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHYDEIELSFTRENLKQYAGEINMSFELEILSFESLNSA-S 568
                     ************************************************************************************966666666.4 PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikv 285
                     +   ++  Ea++Vn+ +  ++ +      +s+ +  L++vk+l Pkvvv  ++ +d+++++F +++  al+ ys l++sl ++++  + +  +++
  Vang04g11970.3 569 WPQPLRDCEAVVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFALQSYSGLLESLdAVNV--HPDVLQMI 655
                     4446799**********988887......777788*********************************************55554..5578899* PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ +l+++ +++v  ++      +e+  +W++ l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr
  Vang04g11970.3 656 EKYYLQPAMEKLVLGRHGF----KERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLISVSTWR 740
                     *************987776....68888************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.569358720IPR005202Transcription factor GRAS
PfamPF035141.0E-94385740IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    Send to blast
MKAVPLPFQE FRGNGVLDFA SGAVAVSDSL LLPQQEQFLQ RWNPHRENYC YVGIEPTSGL  60
DLKRKTSPPT SSSTLSSSRG SSGCGGGCGS TDSTTGAGAA KVSTEKENNP PQAGLEVGQG  120
RCGLGMEDWE SVLSESSAQD NSILKLIMGD IEDPSMGLTK LLQGGSASQD VEFNGVGVGF  180
SLVDQSSVLD PIPSVNFVSS IDPSGPGNCS DFPFNSHSNV NSNISRVGSG VNPPNHGFPD  240
SASNLSPVSL SQGVFQPQQQ HPAIEPLDEK LQVLNPQFIL NQNQAQFMAN PGSVLPLNYA  300
QLQEHHQLLP QPPAKRLNCG PNYQVPKAPF LDSGQELLLR RQQQQLQLLP HHLLQRSSML  360
VAPKQKMASP SGEDLATHQL QQAITEQLFK AAELIDAGNL ELAHGILARL NHQLSPFGRP  420
FQRAAFYFKE ALQLGLHSNA NNSSMTFSPT GLLLKIGAYK SFSEISPVLQ FANFTCNQAL  480
LEAVEGFDRI HIIDFDIGFG GQWSSFMQEL ALRNGGAPEL RITAFVSPSH YDEIELSFTR  540
ENLKQYAGEI NMSFELEILS FESLNSASWP QPLRDCEAVV VNMPIGSFSS YPSYLPLALR  600
FVKQLMPKVV VTLDRSCDRT DAPFPQHLNF ALQSYSGLLE SLDAVNVHPD VLQMIEKYYL  660
QPAMEKLVLG RHGFKERTLS WKNLLLSSGF SPLTFSNFTE SQAECLVQRT PGKGFHVEKR  720
QSSLVLCWQR KDLISVSTWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-3039073925378Protein SCARECROW
5b3h_A6e-3039073924377Protein SCARECROW
5b3h_D6e-3039073924377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g11970.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418938.10.0PREDICTED: scarecrow-like protein 22
RefseqXP_017418939.10.0PREDICTED: scarecrow-like protein 22
TrEMBLA0A0L9U6140.0A0A0L9U614_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVM10.0A0A0S3RVM1_PHAAN; Uncharacterized protein
STRINGXP_007140802.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-125GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]