PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g11970.7
Common NameLR48_Vigan03g159300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 472aa    MW: 53084.9 Da    PI: 7.1938
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g11970.7genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS319.28.4e-981154702374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e+L+++Ae +++g+lela+ +Larl+++ sp g+p+qR+a+yf+eAL+  l++  +   ++++ s+t       ++ a+k fse+sP+l+f+++
  Vang04g11970.7 115 TEQLFKAAELIDAGNLELAHGILARLNHQLSPFGRPFQRAAFYFKEALQLGLHS--NANNSSMTFSPT---GLLLKIGAYKSFSEISPVLQFANF 204
                     689***************************************************..333333444444...4999******************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT+++sp++ ++ el+ t+e+L+++A e++++fe ++l  ++l++   
  Vang04g11970.7 205 TCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHYDEIELSFTRENLKQYAGEINMSFELEILSFESLNSA-S 298
                     ************************************************************************************966666666.4 PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikv 285
                     +   ++  Ea++Vn+ +  ++ +      +s+ +  L++vk+l Pkvvv  ++ +d+++++F +++  al+ ys l++sl ++++  + +  +++
  Vang04g11970.7 299 WPQPLRDCEAVVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFALQSYSGLLESLdAVNV--HPDVLQMI 385
                     4446799**********988887......777788*********************************************55554..5578899* PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ +l+++ +++v  ++      +e+  +W++ l ++GF+p+++s+++++qa++l+++++++g++ve+++ slvl+W+++ L+svS Wr
  Vang04g11970.7 386 EKYYLQPAMEKLVLGRHGF----KERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQSSLVLCWQRKDLISVSTWR 470
                     *************987776....68888************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.56988450IPR005202Transcription factor GRAS
PfamPF035142.9E-95115470IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
LQVLNPQFIL NQNQAQFMAN PGSVLPLNYA QLQEHHQLLP QPPAKRLNCG PNYQVPKAPF  60
LDSGQELLLR RQQQQLQLLP HHLLQRSSML VAPKQKMASP SGEDLATHQL QQAITEQLFK  120
AAELIDAGNL ELAHGILARL NHQLSPFGRP FQRAAFYFKE ALQLGLHSNA NNSSMTFSPT  180
GLLLKIGAYK SFSEISPVLQ FANFTCNQAL LEAVEGFDRI HIIDFDIGFG GQWSSFMQEL  240
ALRNGGAPEL RITAFVSPSH YDEIELSFTR ENLKQYAGEI NMSFELEILS FESLNSASWP  300
QPLRDCEAVV VNMPIGSFSS YPSYLPLALR FVKQLMPKVV VTLDRSCDRT DAPFPQHLNF  360
ALQSYSGLLE SLDAVNVHPD VLQMIEKYYL QPAMEKLVLG RHGFKERTLS WKNLLLSSGF  420
SPLTFSNFTE SQAECLVQRT PGKGFHVEKR QSSLVLCWQR KDLISVSTWR C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-3112046925378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g11970.7
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418938.10.0PREDICTED: scarecrow-like protein 22
RefseqXP_017418939.10.0PREDICTED: scarecrow-like protein 22
SwissprotO813161e-141SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0L9U6140.0A0A0L9U614_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVM10.0A0A0S3RVM1_PHAAN; Uncharacterized protein
STRINGXP_007140802.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-128GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]