PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g11970.9
Common NameLR48_Vigan03g159300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 311aa    MW: 34951 Da    PI: 6.1618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g11970.9genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.43.7e-811930972374
            GRAS  72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                     +    ++ a+k fse+sP+l+f+++t+Nqa+leaveg +r+HiiDfdi+ G+QW +++q+La R++g+p+lRiT+++sp++ ++ el+ t+e+L+
  Vang04g11970.9  19 TGLLLKIGAYKSFSEISPVLQFANFTCNQALLEAVEGFDRIHIIDFDIGFGGQWSSFMQELALRNGGAPELRITAFVSPSHYDEIELSFTRENLK 113
                     44677899*************************************************************************************** PP

            GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261
                     ++A e++++fe ++l  ++l++   +   ++  Ea++Vn+ +  ++ +      +s+ +  L++vk+l Pkvvv  ++ +d+++++F +++  al
  Vang04g11970.9 114 QYAGEINMSFELEILSFESLNSA-SWPQPLRDCEAVVVNMPIGSFSSY------PSYLPLALRFVKQLMPKVVVTLDRSCDRTDAPFPQHLNFAL 201
                     **************966666666.44446799**********988887......777788*********************************** PP

            GRAS 262 eyysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                     + ys l++sl ++++  + +  +++E+ +l+++ +++v  ++      +e+  +W++ l ++GF+p+++s+++++qa++l+++++++g++ve+++
  Vang04g11970.9 202 QSYSGLLESLdAVNV--HPDVLQMIEKYYLQPAMEKLVLGRHGF----KERTLSWKNLLLSSGFSPLTFSNFTESQAECLVQRTPGKGFHVEKRQ 290
                     **********55554..5578899**************987776....68888****************************************** PP

            GRAS 356 gslvlgWkdrpLvsvSaWr 374
                      slvl+W+++ L+svS Wr
  Vang04g11970.9 291 SSLVLCWQRKDLISVSTWR 309
                     ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.9071289IPR005202Transcription factor GRAS
PfamPF035141.3E-7819309IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
LQLGLHSNAN NSSMTFSPTG LLLKIGAYKS FSEISPVLQF ANFTCNQALL EAVEGFDRIH  60
IIDFDIGFGG QWSSFMQELA LRNGGAPELR ITAFVSPSHY DEIELSFTRE NLKQYAGEIN  120
MSFELEILSF ESLNSASWPQ PLRDCEAVVV NMPIGSFSSY PSYLPLALRF VKQLMPKVVV  180
TLDRSCDRTD APFPQHLNFA LQSYSGLLES LDAVNVHPDV LQMIEKYYLQ PAMEKLVLGR  240
HGFKERTLSW KNLLLSSGFS PLTFSNFTES QAECLVQRTP GKGFHVEKRQ SSLVLCWQRK  300
DLISVSTWRC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-262830980375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g11970.9
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418938.10.0PREDICTED: scarecrow-like protein 22
RefseqXP_017418939.10.0PREDICTED: scarecrow-like protein 22
SwissprotO813161e-121SCL6_ARATH; Scarecrow-like protein 6
TrEMBLA0A0L9U6140.0A0A0L9U614_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVM10.0A0A0S3RVM1_PHAAN; Uncharacterized protein
STRINGXP_007140802.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-108GRAS family protein
Publications ? help Back to Top
  1. Bari A,Orazova S,Ivashchenko A
    miR156- and miR171-binding sites in the protein-coding sequences of several plant genes.
    Biomed Res Int, 2013. 2013: p. 307145
    [PMID:23936788]
  2. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]
  3. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]