PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g12030.1

Common Name

LR48_Vigan03g158900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C2H2

Protein Properties

Length: 218aa MW: 23827.7 Da PI: 7.9714

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g12030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00039	4	26	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C +sFs+ L H+r+H Vang04g12030.1 4 HKCKLCFRSFSNGRALGGHMRSH 26 79********************9 PP
2	zf-C2H2	13.9	0.00016	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k+F++ L H +H Vang04g12030.1 90 YKCDTCNKVFRSYQALGGHRASH 112 9***********99999998887 PP
3	zf-C2H2	11.5	0.00095	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F + L H rtH Vang04g12030.1 144 HECPVCFRVFASGQALGGHKRTH 166 79*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.6E-6	4	27	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.11E-9	4	26	No hit	No description
PROSITE profile	PS50157	10.679	4	31	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.065	4	26	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	26	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	5.11E-9	85	112	No hit	No description
Pfam	PF13912	2.0E-13	90	114	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.367	90	117	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.014	90	112	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.86E-5	140	168	No hit	No description
Gene3D	G3DSA:3.30.160.60	0.001	142	169	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	8.3E-11	144	166	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.307	144	171	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.22	144	166	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	146	166	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MDKHKCKLCF RSFSNGRALG GHMRSHMMNL PLSKPEEASP RTIQLSFEAE SASSSSSSSD 60 DDEDGDKCLC YGLRENPKRS IRLVDPEFSY KCDTCNKVFR SYQALGGHRA SHKKIKVNVK 120 VDGEEAEVEH RKKSGTCGVE KKIHECPVCF RVFASGQALG GHKRTHVTGS APSTVPSTSA 180 KFGNSFIDLN LPAPIDEDEA SQIENSAVSD AEFVKTR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g12030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417590.1	1e-86	PREDICTED: zinc finger protein ZAT9
TrEMBL	A0A0L9U6B4	2e-85	A0A0L9U6B4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RW08	2e-85	A0A0S3RW08_PHAAN; Uncharacterized protein
STRING	XP_007140808.1	3e-85	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF767	34	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	1e-34	C2H2-like zinc finger protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]