PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g12490.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family FAR1
Protein Properties Length: 390aa    MW: 44447.1 Da    PI: 9.5748
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g12490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR183.72.9e-26265354190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     kfY +YA++vGF vr+ + ++s  +g++  r++ C+k+g++ ++k +   e+++r++ r gCka++ vk+ek+gkw+vt++ ++HnH+l 
  Vang04g12490.1 265 KFYVDYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNTKGAFGPEKKPRPSAREGCKATILVKLEKSGKWVVTRFIKDHNHPLI 354
                     6**********************************************9****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-24265354IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
LQQEPIGEYK YSEGGEGGAV MSKTGSNSFG ETRGKGVRNL PYPEYIKRRK DGRCFHCGGL  60
YSPGHQFLER SMRVTILEDK EEEEVQKEEE KEQKHMELSS FSSGGLTQPK TMKLQGWVNG  120
RKVLVLRKKT HGYCNGVMVS LDEVEVKESV RDNLKLRTLK ILKTQILLHQ IPRPWIIHPP  180
RLLLTQMIIY PLPFGKVPNN IHEALDILDG DKPWQTFMDF LVVDSDKANE TERCCLEEST  240
SIFKGVEIQE PYVGMEFDSE VAARKFYVDY ARRVGFVVRI MQRRRSGIDG RTLARRLGCN  300
KQGFSPNTKG AFGPEKKPRP SAREGCKATI LVKLEKSGKW VVTRFIKDHN HPLIATANGF  360
GTVSRWFVLV TGSDEYNDPY TESLLGKRVF
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g12490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96531104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12850.29e-48FAR1 family protein