PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g12980.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 185aa    MW: 20968 Da    PI: 8.9474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g12980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM972.8e-30361611128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lp+G+rF+Ptde l  +yL+k++ +++l+  + i++ d++++ePw+Lp   k    +w  +fF   +++   g+ ++r + +g W+   kd+ev 
  Vang04g12980.1  36 LPVGYRFDPTDEILAGYYLRKRIMAHPLPN-DLIQDYDVHQTEPWELPGGGKC--MNWqrFFFYDVRSR-VLGNPEKRDAGKGQWEMVEKDEEVG 126
                     799*************************99.99***************43333..34443555555444.4688999999*************** PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++++  k +Lvf+k++ ++  kt+Wvmhe+rl
  Vang04g12980.1 127 FSDEQVIAKKSVLVFWKAKGSSLAKTKWVMHEFRL 161
                     999******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-3229166IPR003441NAC domain
PROSITE profilePS5100532.70436184IPR003441NAC domain
PfamPF023651.0E-1637161IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
LISFITSPSS IQSQKDFGVA SLMEVLNPVG GDTYRLPVGY RFDPTDEILA GYYLRKRIMA  60
HPLPNDLIQD YDVHQTEPWE LPGGGKCMNW QRFFFYDVRS RVLGNPEKRD AGKGQWEMVE  120
KDEEVGFSDE QVIAKKSVLV FWKAKGSSLA KTKWVMHEFR LALKSNPSKN THHAPPPRIT  180
LTVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-163616115140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g12980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-142AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417586.11e-108PREDICTED: NAC domain-containing protein 83-like
TrEMBLA0A0L9U6B51e-107A0A0L9U6B5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVW81e-107A0A0S3RVW8_PHAAN; Uncharacterized protein
STRINGXP_007161703.14e-90(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-27NAC domain containing protein 83