PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13360.1
Common NameLR48_Vigan03g170000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 178aa    MW: 20657.9 Da    PI: 10.3787
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13360.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.69.2e-1379165496
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     v +++  +++g ++lp+  +++ ++  ee +tl++ d   r+W+vkl   ++++   ++t +  +F+++n+LkegD + Fkl++ ++ ++v+kv
  Vang04g13360.1  79 VIMKPTFFTTGYMYLPRAAVRSQNKRREEFVTLVVGD---RRWRVKL--VRYPNDsAYFT-NLLDFARDNNLKEGDACFFKLMN-MGDNMVIKV 165
                     5678899999**********99987766666666555...*******..44444436677.9*******************987.888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-1574167IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.36176171IPR003340B3 DNA binding domain
SuperFamilySSF1019366.67E-1476164IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.8E-877171IPR003340B3 DNA binding domain
CDDcd100175.80E-1277165No hitNo description
PfamPF023621.1E-1079165IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSCMEIDYPV NKANHKRVRI KSENIQPPKT KKTTENKKRC CSNLQDTASD ELVRDHKGML  60
KNLNEGKRNM EALENTFMVI MKPTFFTTGY MYLPRAAVRS QNKRREEFVT LVVGDRRWRV  120
KLVRYPNDSA YFTNLLDFAR DNNLKEGDAC FFKLMNMGDN MVIKVSFVAR NSSLRGQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g13360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-144AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416671.11e-128PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0L9U6691e-128A0A0L9U669_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVR71e-128A0A0S3RVR7_PHAAN; Uncharacterized protein
STRINGGLYMA08G44640.14e-50(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-09related to vernalization1 1
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]