PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g13430.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 246aa    MW: 26996.4 Da    PI: 5.1367
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g13430.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-1852103156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     + y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Vang04g13430.3  52 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 103
                     57*****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-3252112No hitNo description
PfamPF008472.5E-1352103IPR001471AP2/ERF domain
PROSITE profilePS5103223.24853110IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2153111IPR016177DNA-binding domain
SMARTSM003802.0E-3753116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3153111IPR001471AP2/ERF domain
PRINTSPR003672.5E-105465IPR001471AP2/ERF domain
PRINTSPR003672.5E-107692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTISTTTTTT TTITSSSPSS SSSSASSTSQ NQNTPNKECK KRQRNGDDNK HPSYRGVRMR  60
AWGKWVSEIR EPRKKSRIWL GTYPTAEMAA RAHDVAALAI KGHSAYLNFP NLAQDLPRPI  120
TTSPKDIQAA AAKAATTFFD DGKRCEAEKD EQNHTEQASS STLCMENTEV EQVQAEEASP  180
STLSMDTTQG SSTSHSTADD DTLFDLPDLF PDGNNGLFFS YSSSWHLCAA DSGFRLEEQF  240
LWENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17511111273Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g13430.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418094.11e-160PREDICTED: ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ73e-68ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9U6A81e-159A0A0L9U6A8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVU01e-159A0A0S3RVU0_PHAAN; Uncharacterized protein
STRINGXP_007140776.11e-131(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]