PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g14130.1
Common NameLR48_Vigan03g208200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 261aa    MW: 29739.8 Da    PI: 8.4588
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g14130.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.1e-1381133155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     ++ +hn+ Er RR+++N+  + Lr+llP a   + kK+s  +++ ++ +YI +Lq
  Vang04g14130.1  81 KKLSHNASERDRRKKVNNLVSSLRSLLPMA--DQTKKMSIPATVSRVLKYIPELQ 133
                     6789*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.780132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1581151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.99E-1181137No hitNo description
PfamPF000103.1E-1081133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1281149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-1086138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
LLTAPNKSSS FTMVALFSPI FSPKGWLLEE EPLAYNNSHN LFYKDDASSE YSFPYHFYSP  60
QTQIELEERS IAPSSDPAMV KKLSHNASER DRRKKVNNLV SSLRSLLPMA DQTKKMSIPA  120
TVSRVLKYIP ELQQQVQALT KRKEELLGRI SRQLQGDAVN KESHRKISHH NSSFVVSTTR  180
LNECEAVVHI SCHETHKAPL SEILQCLEND GLFLLDASSS ETFGGRFFYN LHFQVEKTNR  240
LAPEILTEKL LPIYEKQRIF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g14130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418090.10.0PREDICTED: transcription factor ORG2-like
TrEMBLA0A0L9U7C30.0A0A0L9U7C3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RX610.0A0A0S3RX61_PHAAN; Uncharacterized protein
STRINGXP_007162129.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.15e-49bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]