PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g14650.1
Common NameLR48_Vigan03g234200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 477aa    MW: 52701.6 Da    PI: 8.5712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g14650.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.6e-33198253359
                     -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh 
  Vang04g14650.1 198 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGQIAEIVYKGEHNHL 253
                     9***************************************.***************5 PP
2WRKY102.32.7e-32395452259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+vkg+++prsYYrCt  +C+v+k+ver+ +dp+ +++tYeg+Hnh+
  Vang04g14650.1 395 GDGFRWRKYGQKVVKGNPYPRSYYRCTNVKCNVRKHVERAIDDPRSFVTTYEGKHNHD 452
                     5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.0E-29182255IPR003657WRKY domain
SuperFamilySSF1182905.1E-25195255IPR003657WRKY domain
SMARTSM007741.3E-36196254IPR003657WRKY domain
PROSITE profilePS5081123.433198255IPR003657WRKY domain
PfamPF031062.1E-25198252IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-33380454IPR003657WRKY domain
SuperFamilySSF1182901.96E-28387454IPR003657WRKY domain
PROSITE profilePS5081134.612389454IPR003657WRKY domain
SMARTSM007744.9E-38394453IPR003657WRKY domain
PfamPF031062.4E-25396452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
LKMDIKEAER VVIAKPVASR PTCSTFKSFS ELLAGAINVS PDIASSQATV SAIRPKTVRF  60
KPASLNHPHT GFDSCQADTF GAALSNSSDK IAKLDHNQSL IYKPTAKLVS KTTVSLLANM  120
KGNCSTGQRQ TRQLMEANFQ HSINEKFRTN MSSHLDQSIA PHAEINEISE ASKMVQQNTE  180
EEQKTLTSSA NCDRPSYDGY NWRKYGQKQV KGSEYPRSYY KCTHPNCPVK KKVERSFDGQ  240
IAEIVYKGEH NHLKPQLPKR NTATGTQGSG VLSDGMVQDM WSNSHSERNE GNESRVENTG  300
GGLSVLSDYY VKLPQPNDSG LNIGATNAGG GSTENSCGLS GECEEGSKGY EAHEDEPRSK  360
RRKNENLSNE VALSEEGLVE PRIVMQSFTD SEILGDGFRW RKYGQKVVKG NPYPRSYYRC  420
TNVKCNVRKH VERAIDDPRS FVTTYEGKHN HDMPLKNTGN VASERDSQAS LCKDKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-31198454877Probable WRKY transcription factor 4
2lex_A1e-31198454877Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g14650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312420.0KT031242.1 Glycine max clone HN_CCL_24 WRKY transcription factor (Glyma19g36100.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415935.10.0PREDICTED: WRKY transcription factor 44 isoform X1
TrEMBLA0A0L9U8480.0A0A0L9U848_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RYK30.0A0A0S3RYK3_PHAAN; Uncharacterized protein
STRINGXP_007162709.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67903450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.11e-110WRKY family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]