PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g14840.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family S1Fa-like
Protein Properties Length: 95aa    MW: 10279.1 Da    PI: 10.5746
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g14840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA137.53e-433094670
            S1FA  6 veakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                    +  +GlnPGlivllvvgglll+flvgn++ly+yaqk+lPPrkkkPvskkk+k+e+lkqGv++PGe
  Vang04g14840.1 30 ASNQGLNPGLIVLLVVGGLLLTFLVGNFVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 94
                    5569************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046893.1E-403194IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSAKHEFSAS AMADDFEFAD KVPPSFDRVA SNQGLNPGLI VLLVVGGLLL TFLVGNFVLY  60
TYAQKTLPPR KKKPVSKKKM KKERLKQGVS APGE*
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g14840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-107AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495220.17e-54DNA-binding protein S1FA
RefseqXP_017416263.17e-54PREDICTED: DNA-binding protein S1FA-like
SwissprotQ7XLX64e-15S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0L9U9102e-52A0A0L9U910_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RYM82e-52A0A0S3RYM8_PHAAN; Uncharacterized protein
TrEMBLA0A1S3TN662e-52A0A1S3TN66_VIGRR; DNA-binding protein S1FA
STRINGXP_007162731.16e-28(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54093355
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]