PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g16730.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 358aa    MW: 40668.5 Da    PI: 5.4971
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g16730.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l ++++  G g+W+t ++  g+ R++k+c++rw +yl
   Vang04g16730.1 14 KGRWTAEEDEILTKYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
2Myb_DNA-binding50.35.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg  + eE+  +v++++ lG++ W++Ia++++ gRt++++k++w+++l
   Vang04g16730.1  67 RGDISLEEENTIVKLHASLGNR-WSLIASHLP-GRTDNEIKNYWNSHL 112
                      567789****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-21564IPR009057Homeodomain-like
PROSITE profilePS5129414.863961IPR017930Myb domain
SuperFamilySSF466891.06E-2711108IPR009057Homeodomain-like
SMARTSM007176.7E-121363IPR001005SANT/Myb domain
PfamPF002496.5E-141461IPR001005SANT/Myb domain
CDDcd001678.84E-81661No hitNo description
PROSITE profilePS5129424.81262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2465116IPR009057Homeodomain-like
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PfamPF002492.3E-1467112IPR001005SANT/Myb domain
CDDcd001671.19E-971112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRAPCCEKV GMKKGRWTAE EDEILTKYIQ ANGEGSWRTL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGDI SLEEENTIVK LHASLGNRWS LIASHLPGRT DNEIKNYWNS HLSRKIYTFR  120
GTTNSKPDII TLTLPPKRKR GRTSRWAMKK NKTYCAPKQK QPLLPAVPLP PTPPLETEKH  180
SSTHENTTTQ EEENLVTNAI WVEGEKEIMN IWGPYDEEVI NGGEGDQVLS FESFNDIMNS  240
YCSQASGCWT ISDEGYSESS EVVGNKTCDH TVLSSGREKQ CFCSTKFSSD SDLCQSAAQL  300
DHKDESLLDH KDESVSWEQH QSLLSWLCED EDWEKDLQSV GEIDPQKQKD MVDWFLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-22141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C4e-221411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-221411658159MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-221211625128MYB TRANSFORMING PROTEIN
1mse_C1e-22141164105C-Myb DNA-Binding Domain
1msf_C1e-22141164105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g16730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418017.10.0PREDICTED: transcription factor MYB12-like isoform X1
RefseqXP_017418018.10.0PREDICTED: transcription factor MYB12-like isoform X2
TrEMBLA0A0S3S0A30.0A0A0S3S0A3_PHAAN; Uncharacterized protein
STRINGXP_007163163.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-75myb domain protein 111