PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g17100.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 237aa    MW: 26013.4 Da    PI: 4.5169
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g17100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.8e-182583146
                     TSSS-HHHHHHHHHHHHHTTTT..............-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..............tWktIartmgkgRtlkqcksrwqk 46
                     +g+WT+eEd ll d+++ +G g               W++Ia++++ gRt++++k++w++
   Vang04g17100.1 25 KGPWTEEEDSLLFDYITVHGEGhwnsvarytgmqtfMWSKIAEHLP-GRTDNEIKNYWRT 83
                     79********************************************.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-192091IPR009057Homeodomain-like
PROSITE profilePS5129418.2582089IPR017930Myb domain
SuperFamilySSF466898.98E-142281IPR009057Homeodomain-like
SMARTSM007175.5E-122487IPR001005SANT/Myb domain
PfamPF002491.4E-72556IPR001005SANT/Myb domain
CDDcd001673.65E-132783No hitNo description
PfamPF002494.5E-76283IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MERSLSENGS SGTYGSSEEE MSITKGPWTE EEDSLLFDYI TVHGEGHWNS VARYTGMQTF  60
MWSKIAEHLP GRTDNEIKNY WRTRVVKQAK QLKCDVNSKQ FRDTLRFVWM PRMLERIQAQ  120
ASSSGQAQTT LMSNVQAHSD PCGGATATAS ASDAGFPSEA SSAAGVHGHS LSDSGASYSL  180
MGGGSWYSYG AEEGYGREWE ERNNGYSEIA GSGFGGVDMW TEENICFLQQ QLADDF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g17100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417457.11e-164PREDICTED: transcription factor MYB108-like
SwissprotQ9FGY31e-41MYB78_ARATH; Transcription factor MYB78
TrEMBLA0A0S3S0591e-163A0A0S3S059_PHAAN; Uncharacterized protein
STRINGXP_007163206.11e-122(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.14e-38myb domain protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]