PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g17110.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 251aa    MW: 28550.9 Da    PI: 5.1798
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g17110.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.8e-101748132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+W+ eEd ll ++v+ +G g+W+++ar+ g
   Vang04g17110.1 17 KGPWSVEEDTLLQNYVATHGDGRWNSVARCAG 48
                     79****************************99 PP
2Myb_DNA-binding30.39.4e-1064982246
                     T...........-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 22 g...........tWktIartmgkgRtlkqcksrwqk 46
                                  W++Iar+++ gRt++++k++w++
   Vang04g17110.1 64 LsilkdevifliMWSKIARHLP-GRTDNEIKNYWRT 98
                     4555555566656*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.64812104IPR017930Myb domain
SuperFamilySSF466897.42E-151596IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.9E-101648IPR009057Homeodomain-like
SMARTSM007172.1E-1016102IPR001005SANT/Myb domain
PfamPF002491.9E-81749IPR001005SANT/Myb domain
CDDcd001673.17E-91998No hitNo description
Gene3DG3DSA:1.10.10.608.9E-117799IPR009057Homeodomain-like
PfamPF002497.3E-77798IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MKKSRSAEEV NSEDTRKGPW SVEEDTLLQN YVATHGDGRW NSVARCAGTY YTLFIRYQTK  60
HSALSILKDE VIFLIMWSKI ARHLPGRTDN EIKNYWRTRV LKQARNLKCD VDSEQFKDAL  120
RYVWMPRLIE RIEPSSETHH PPPVSLFELH PNPTPSLHHQ NGLHGSCSGS NALDSSSAKL  180
ETPLEPEDMG HNNVSVPGVC ENMNDRDVEQ GNITLPFAGG DSMESLWDDE NLWLMQQLCD  240
DLEIKDNFLA *
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g17110.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416802.11e-162PREDICTED: transcription factor MYB108-like
SwissprotQ10MB45e-45MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0S3S0421e-161A0A0S3S042_PHAAN; Uncharacterized protein
STRINGXP_007163207.11e-127(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.14e-43myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]