PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g17360.1

Common Name

LR48_Vigan03g272300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 531aa MW: 57320.4 Da PI: 7.1877

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g17360.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.2e-30	299	357	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+ ed++v+++tYeg+Hnh+ Vang04g17360.1 299 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCVEDKTVLITTYEGNHNHP 357 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.0E-33	283	359	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-27	291	359	IPR003657	WRKY domain
PROSITE profile	PS50811	29.849	293	359	IPR003657	WRKY domain
SMART	SM00774	2.5E-36	298	358	IPR003657	WRKY domain
Pfam	PF03106	4.3E-26	300	357	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
LPTLTFLLSL SLCISLIKHM ENRHHRELTF LSSGGDFLNP PFDHTTRNTD PPIKEMDFFS 60 SSPSSPATHK ANNTNHINHV GLQDDTHRQG SPPHVSHHPV NTGLNLTCAS TGLTKEENGE 120 NHEAELSSIE SQLRRLQEEN RKLRTVLDQI TRSYTQLQAQ LFITLQKQKL PQNTEANGMV 180 SEQKNVDPAG VCRKLEVVNE ASVCDEKTDG EVSVCRSNNV EVLSKTDDDE APQFIKLNLG 240 KQACPDAAED VLDRSSSQSW GSSKLEEQPK TAEQVSADQI PLRKARVSVR ARSEAPLISD 300 GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCV EDKTVLITTY EGNHNHPLPP 360 AATAMASTTS AAAAMLLSGS TASKEALTNS AGYYSSLPYA SMATLSASAP FPTITLDLTQ 420 NPNAMHLHRV PPHATTFPLP LHASGGHQLL GHPLFFSQKL PPAASPLLHA RQTSSMVETV 480 SAAIASDPNF TSALAAAISS IIGIPSNNNG TTGAIGSPQL PQSCTTFSTN *

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

LPTLTFLLSL SLCISLIKHM ENRHHRELTF LSSGGDFLNP PFDHTTRNTD PPIKEMDFFS  60
SSPSSPATHK ANNTNHINHV GLQDDTHRQG SPPHVSHHPV NTGLNLTCAS TGLTKEENGE  120
NHEAELSSIE SQLRRLQEEN RKLRTVLDQI TRSYTQLQAQ LFITLQKQKL PQNTEANGMV  180
SEQKNVDPAG VCRKLEVVNE ASVCDEKTDG EVSVCRSNNV EVLSKTDDDE APQFIKLNLG  240
KQACPDAAED VLDRSSSQSW GSSKLEEQPK TAEQVSADQI PLRKARVSVR ARSEAPLISD  300
GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC PVRKQVQRCV EDKTVLITTY EGNHNHPLPP  360
AATAMASTTS AAAAMLLSGS TASKEALTNS AGYYSSLPYA SMATLSASAP FPTITLDLTQ  420
NPNAMHLHRV PPHATTFPLP LHASGGHQLL GHPLFFSQKL PPAASPLLHA RQTSSMVETV  480
SAAIASDPNF TSALAAAISS IIGIPSNNNG TTGAIGSPQL PQSCTTFSTN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	285	361	1	76	WRKY transcription factor 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g17360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417253.1	0.0	PREDICTED: probable WRKY transcription factor 47
TrEMBL	A0A0L9U9E0	0.0	A0A0L9U9E0_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S080	0.0	A0A0S3S080_PHAAN; Uncharacterized protein
STRING	XP_007163249.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10439	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01720.1	5e-75	WRKY family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]