PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0548s00010.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 236aa    MW: 25688.4 Da    PI: 8.8167
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0548s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP81.21.4e-2565118154
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelse 54 
                       +Cq+egC++dlseak+yhrrhkvCe+hska++v+++gl+qrfCqqCsr  +l e
  Vang0548s00010.1  65 RCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRLWSLGE 118
                       6***********************************************999876 PP
2SBP47.83.9e-151391704778
                       SSEEETTT--SS--S-STTTT-------S--- CS
               SBP  47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       s fh lsefD++krsCr+rLa+hn+rrrk+q+
  Vang0548s00010.1 139 SGFHLLSEFDNGKRSCRKRLADHNRRRRKTQQ 170
                       78***************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.5E-2961155IPR004333Transcription factor, SBP-box
PROSITE profilePS5114125.60763168IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-2364118IPR004333Transcription factor, SBP-box
PfamPF031103.6E-1966117IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.71E-11139171IPR004333Transcription factor, SBP-box
PfamPF031108.9E-8140167IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSKSEDVTSP INFECSGHGL GPGPGLGLNL GGRTYFAASN EDILDRFYRC KTVESVSTVA  60
SNLPRCQAEG CNTDLSEAKH YHRRHKVCEF HSKAATVIAA GLTQRFCQQC SRLWSLGEGV  120
LHNYEFATGR CSLNQSLASG FHLLSEFDNG KRSCRKRLAD HNRRRRKTQQ ATQDIHKSQP  180
SLDNVTWSSS ESGAQSSSSM KVAVSPPDYF QQNRGTSSTS SSGSLFFSSG ANLHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-2657167284squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0548s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417868.11e-173PREDICTED: squamosa promoter-binding-like protein 8 isoform X1
SwissprotQ8GXL31e-53SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A0L9U7751e-105A0A0L9U775_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RVT61e-105A0A0S3RVT6_PHAAN; Uncharacterized protein
STRINGXP_007140981.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68013348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.15e-50squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]