PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0595s00020.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

FAR1

Protein Properties

Length: 549aa MW: 62164.3 Da PI: 8.3649

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0595s00020.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.8e-07	55	138	7	90
FAR1 7 AkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+++GF v++ +s + + g+ t + C + gk ++ k + + + +++C +lk k + d+ w+++ + +HnHel+ Vang0595s00020.1 55 AYDLGFVVVIVRSDITtSVRGRKTFIILGCERGGKYQKYKAH--AVPSVYDTRKCECPFRLKGKPCSdDDGWVLKVMCGHHNHELV 138 999**9998887664677778888899**9998877..45555566667777777777666899************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.2E-5	55	138	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-13	155	223	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MDEYLHMDSQ VGSSLISDFS SFIGKVGEGD LTNKFTTNEI FRSQEHLIDW VRGMAYDLGF 60 VVVIVRSDIT TSVRGRKTFI ILGCERGGKY QKYKAHAVPS VYDTRKCECP FRLKGKPCSD 120 DDGWVLKVMC GHHNHELVET LVGHPYADRL NMRLNFSIAF TFLSIERQSN FTWALEKVKC 180 LFLTSEGGLK VIVTDQDLAL MNAIANVFPE SYQMLCEFHI LKNVKAKCKM LVHSTEVWGV 240 LMDAWQNVMY CNDESLFANI HNVIILQHNK IKASFERSLL LTSDPFKGYI YKKLIGCVSR 300 YALDLIPKEL EKVQLIGLDS SKCGCVLRHT VGVPCACELA RYDVGLIPLG EFHIMWRRLH 360 LSNVELNETE PELSIKDELK QVQERFNEVD IGGKVTIKQK LLEITCPTLT SMVPPLHKVK 420 TKGAQKKSST VKSKLQSKPN VVKKKKVPMI DQFHSITHPF IVDVVDVVAD GHCGYRCIVV 480 SLGLGEDSWP VIRNDLYKEL SQWHDEYASL VGGWRGSTMG SCLLWNIGAL CRRKSGSCVR 540 WSRNDIRM*

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MDEYLHMDSQ VGSSLISDFS SFIGKVGEGD LTNKFTTNEI FRSQEHLIDW VRGMAYDLGF  60
VVVIVRSDIT TSVRGRKTFI ILGCERGGKY QKYKAHAVPS VYDTRKCECP FRLKGKPCSD  120
DDGWVLKVMC GHHNHELVET LVGHPYADRL NMRLNFSIAF TFLSIERQSN FTWALEKVKC  180
LFLTSEGGLK VIVTDQDLAL MNAIANVFPE SYQMLCEFHI LKNVKAKCKM LVHSTEVWGV  240
LMDAWQNVMY CNDESLFANI HNVIILQHNK IKASFERSLL LTSDPFKGYI YKKLIGCVSR  300
YALDLIPKEL EKVQLIGLDS SKCGCVLRHT VGVPCACELA RYDVGLIPLG EFHIMWRRLH  360
LSNVELNETE PELSIKDELK QVQERFNEVD IGGKVTIKQK LLEITCPTLT SMVPPLHKVK  420
TKGAQKKSST VKSKLQSKPN VVKKKKVPMI DQFHSITHPF IVDVVDVVAD GHCGYRCIVV  480
SLGLGEDSWP VIRNDLYKEL SQWHDEYASL VGGWRGSTMG SCLLWNIGAL CRRKSGSCVR  540
WSRNDIRM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0595s00020.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017416471.1	0.0	PREDICTED: uncharacterized protein LOC108327258
TrEMBL	A0A1S3VVA0	0.0	A0A1S3VVA0_VIGRR; uncharacterized protein LOC106778829

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF180	11	22