PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g01260.1
Common NameLR48_Vigan09g014800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 213aa    MW: 24544.1 Da    PI: 9.795
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g01260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.67.9e-17771291057
                     HHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  10 eqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                      q+ +Le l++  +r+p+a+++e+++ +l    +++ ++V++WFqN++a++++
  Vang05g01260.1  77 GQIGILEMLYKGgTRTPNAQQIEQITVQLgkygKIEGKNVFYWFQNHKARKRQ 129
                     69*********99*************************************996 PP
2Wus_type_Homeobox96.52.2e-31771311165
  Wus_type_Homeobox  11 eQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                         Qi iLe+lyk G+rtPn+++i++it +L +yGkie+kNVfyWFQN+kaR+rqkq
     Vang05g01260.1  77 GQIGILEMLYKGGTRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARKRQKQ 131
                        5****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.002867134IPR001356Homeobox domain
SuperFamilySSF466891.31E-976137IPR009057Homeodomain-like
PfamPF000461.6E-1477129IPR001356Homeobox domain
CDDcd000860.0047378131No hitNo description
Gene3DG3DSA:1.10.10.608.4E-678129IPR009057Homeodomain-like
PROSITE profilePS500719.47578130IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTISMKVHHF TRAFWEHEPF LTLGCKRLRP LAPKLPNLHT TTPSLPFDLK SFIRPESCPR  60
KQVSSLHNNK DPPSPQGQIG ILEMLYKGGT RTPNAQQIEQ ITVQLGKYGK IEGKNVFYWF  120
QNHKARKRQK QKRNSLAFSH SPRTPTIHSV VTLEAAKGEV VDRDEEEGSP YKKKCRRWVF  180
DCLEEQSMSS SSLCEEEEYR TLELFPLHPE GR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g01260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-132AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435874.11e-144PREDICTED: WUSCHEL-related homeobox 4-like
SwissprotQ6X7J91e-54WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A0L9VA311e-142A0A0L9VA31_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RBI71e-142A0A0S3RBI7_PHAAN; Uncharacterized protein
STRINGXP_007140278.11e-129(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61323452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-54WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  4. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  5. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  6. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]