PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g01590.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 862aa    MW: 95571.7 Da    PI: 8.1363
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g01590.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16769856194
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     f+k +++s+v+   +l lp +f++++  +    ++  +tl de+g+++   +   k++ +  l++GWk+F+ a++L +gD ++F+l++r++f+ +
  Vang05g01590.3 769 FIKSMLQSHVSGGFWLGLPVHFCKSNlpK----GDEVMTLIDEDGNEYPTIY--LKRKTG--LSGGWKGFAVAHDLADGDALIFQLIKRTTFKVT 855
                     89*********************999543....4458***************..666644..9************************99999766 PP

                     E CS
              B3  94 v 94 
                     +
  Vang05g01590.3 856 H 856
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF534749.92E-978219IPR029058Alpha/Beta hydrolase fold
PfamPF057058.6E-2981328IPR008547Protein of unknown function DUF829, TMEM53
Gene3DG3DSA:3.40.50.18209.8E-5113213IPR029058Alpha/Beta hydrolase fold
SuperFamilySSF517354.41E-62365685IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7204.1E-60366684IPR016040NAD(P)-binding domain
CDDcd052288.96E-116368684No hitNo description
PfamPF013705.4E-29368592IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
Gene3DG3DSA:2.40.330.109.6E-19763856IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-22763856IPR015300DNA-binding pseudobarrel domain
CDDcd100175.04E-24767855No hitNo description
PfamPF023621.3E-14769857IPR003340B3 DNA binding domain
SMARTSM010192.9E-22769860IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18769861IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0016487Biological Processfarnesol metabolic process
GO:0005774Cellular Componentvacuolar membrane
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0047886Molecular Functionfarnesol dehydrogenase activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 862 aa     Download sequence    Send to blast
LPGLDQYGYP DQVRFFPEKA TILAVDILNE LVEVLKIRQC PIVFASFSGG SKACMQKILQ  60
IISGSSEAHN MDDYQLVREC ISGYIYDSSP IDFTSNLGVR FLLHPNVLKV SHPPRFASWF  120
ANGIASGLDS LFLSRFESQR AEYWQTLYST INMKVPYLIL CSENDDLAPF QVISNFFQRL  180
KDLGGDVKML KWSASPHVGH FRHHPIDYKA AITEILGKAV ATYCCKSSRK VEDEKLGIEG  240
ARDEITDPFS ESRKAAMTST SFQGFALAPS DSLSSSSTEY EVGKDIGTIA DERKGGYIHL  300
PSRPSINAHG LLSQILFDVC VPKNVEDWDI RSSSKNALSA VLGKSKKTER VFQNQREFFR  360
VESGTMKILV TGASGFLGGR LCDALLLQGY SVRVLVRSTS DISSLSPDIE IFHGDITDYA  420
SILAACSSCT IVFHLAALVE PWLPDPSKFF SVNVGGLKNV LAAVMETRTV EKLLYTSSFF  480
ALGPTDGGVA DENQVHHEKY FCTEYEKSKA AADKIALQAA SEGVPIVLLY PGVIYGPGKV  540
TAGNVVARML VERFSGRLPG YVGYGSDKFS FSHVDDVVEG QISAMKKGKV GSRYLLTGEN  600
ASFKHVFDMA AVITDTKKPV FSIPLWVIEV YGWLSVLFSR ITGKLPFISP PTVHVLRHRW  660
EYCCEKAKSE LDYRPRSLKE GLAELKSIKK SRTTEKELVV VRRSGRLAKL CSPVYKEMPI  720
DRISIPRRCV SNRHRDLSNR VYASDEARME ALEQAENLMS GLKSDIPNFI KSMLQSHVSG  780
GFWLGLPVHF CKSNLPKGDE VMTLIDEDGN EYPTIYLKRK TGLSGGWKGF AVAHDLADGD  840
ALIFQLIKRT TFKVTHHTLV F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wj7_A6e-433626848330Putative oxidoreductase
3wj7_B6e-433626848330Putative oxidoreductase
3wj7_C6e-433626848330Putative oxidoreductase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g01590.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JD230.0A0A498JD23_MALDO; Uncharacterized protein
STRINGGLYMA06G04186.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-52B3 family protein