PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g03850.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Nin-like
Protein Properties Length: 822aa    MW: 91791.8 Da    PI: 5.2673
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g03850.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK53.64.4e-17328378252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                      k+++l+dl+  F+l+ikdAA e+gv+++v+K iCR+  I+ WP+Rk++sl
  Vang05g03850.1 328 IKKMTLNDLRGVFHLTIKDAAAEIGVSVSVIKGICRRERISYWPQRKVTSL 378
                     589*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151915.016312398IPR003035RWP-RK domain
PfamPF020422.1E-15330378IPR003035RWP-RK domain
PfamPF121653.2E-8437479IPR021998Alfin
PfamPF121659.1E-41488582IPR021998Alfin
PfamPF121657.3E-46610709IPR021998Alfin
SuperFamilySSF579031.51E-15758818IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.5E-17759817IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500169.356763817IPR019787Zinc finger, PHD-finger
CDDcd156132.17E-26765817No hitNo description
SMARTSM002498.5E-10765815IPR001965Zinc finger, PHD-type
PfamPF006282.5E-10766816IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590766814IPR019786Zinc finger, PHD-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 822 aa     Download sequence    Send to blast
SPTNRVGGGA VFGVAAADIS IFLTVIKCFS ASNVSMDNDW DNSSHSFHNP LICNYIEPDP  60
ALVYTVNDHP DVEPQQPNVP VLVEHGNHLT VGGGVPNLEK GNWSTRKPKI PFMDPMIEYH  120
PVHGDNTFPN GENTSADVNL NDLRFCRPVP KPMFCTCCQV LRQLIYTNGS DCDETFEIHG  180
EIGVISHAIV HCQNFTPDGL SGDSYRRIEY VLKLLHGDVT LNKASSSFYV LVYIQPLSAF  240
GCISFSHNST AEIKSYLVEY CTQKNKLGYI ALEDPLSTYY EALCTGLETV GGFIGEEENT  300
IPQPELEAES KRASSAVKPN RQFQIKRIKK MTLNDLRGVF HLTIKDAAAE IGVSVSVIKG  360
ICRRERISYW PQRKVTSLAK RVEVLKKSLD SADPVEYSCF NSKNNSVFNC NGEEAIMTES  420
LRYMEAAVGA PSNHPSVQEV FLDFKGRRAA IVKALTIDYE DFFQQCDPVL LDTSDMLYLI  480
CMTIVISGKD DLCLYGFPNE VWQVDLPAEE VPAEIPEPVL GINFARDGME ERDWVCFVAA  540
HSDTWLIAVA MFFGARFGFD KADRDNLFNM INDLPTVFEA VVGKVKKQGK KKSPVSNHNN  600
KSKSNFKESK SEPENKENLC LYGFPNEHWE VNLPAEEVPP ELPEPALGIN FARDGMEEKD  660
WLSLVAVHSD TWLISVAMYF GARFGFDKAD RKSLFSMIND LPTIFEVVAG KAKKQGKEKS  720
SVSNHDNNKS KSNKRGSESQ EKYSKSMEPK NEGALEKDDE HGEELCGACG ENYGNDADEF  780
WIGCDICEKW FHGRCVRITP AKAQNIKEYK CPSCSNKRVR Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5xvj_A2e-454367125135PHD finger protein ALFIN-LIKE 7
5xvj_B2e-454367125135PHD finger protein ALFIN-LIKE 7
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g03850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.16e-10Nin-like family protein