PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g03980.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 177aa    MW: 20072.9 Da    PI: 5.1633
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g03980.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.92.4e-24100146147
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTE CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkv 47 
                     +dDg++WrKYG+K+vk+s++pr+YYrC+ +gC+vkk ver+++dp+ 
  Vang05g03980.1 100 MDDGFKWRKYGKKMVKNSPNPRNYYRCSVEGCSVKKVVERDKDDPSR 146
                     59******************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-2587146IPR003657WRKY domain
SuperFamilySSF1182906.67E-2293147IPR003657WRKY domain
PROSITE profilePS5081122.95195144IPR003657WRKY domain
SMARTSM007741.6E-21100150IPR003657WRKY domain
PfamPF031063.2E-18101145IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MSGDNTKPSD SPESDFTKQW PSELSEYLNL DDDQWSYDDL DSFVSGHVFS HKTEANEVGE  60
LGGSSTHHEE FSIRDDGNEH EKKEVRDRVA FKTKSEIEIM DDGFKWRKYG KKMVKNSPNP  120
RNYYRCSVEG CSVKKVVERD KDDPSRIHEL QPSSDIRGSK LKCTSHGLNP VIGEAN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-1890147764Probable WRKY transcription factor 4
2lex_A3e-1890147764Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g03980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-120AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421495.11e-103PREDICTED: probable WRKY transcription factor 50
SwissprotQ8VWQ51e-33WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBLA0A0L9UHA61e-102A0A0L9UHA6_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RBR31e-102A0A0S3RBR3_PHAAN; Uncharacterized protein
STRINGXP_007136862.14e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-33WRKY DNA-binding protein 50
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]