PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g04170.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 189aa    MW: 21332.2 Da    PI: 9.5945
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g04170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-196396134
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                    C+ C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  Vang05g04170.1 63 CADCNTTSTPLWRSGPNGPKSLCNACGIRQRKAR 96
                    *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.8E-1757110IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.56E-135899No hitNo description
Gene3DG3DSA:3.30.50.104.0E-166196IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.8096193IPR000679Zinc finger, GATA-type
CDDcd002026.26E-136299No hitNo description
PfamPF003202.4E-176396IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406388IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MADPNSSSCG HLAEEEIEEQ ENRRGNYEYE KWLSSNVRLT RKMMSPPSNN LATNKAFDII  60
RVCADCNTTS TPLWRSGPNG PKSLCNACGI RQRKARRAMA EAANSCMDAK SRVRHQKEKK  120
CRRNHFAGFK NKSKTDRGTL SEEQKVRIHL KDFSVSLRDD SALKQESPMD EVAQAAMLLM  180
DLSRGFLY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g04170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017421380.11e-140PREDICTED: putative GATA transcription factor 22
TrEMBLA0A0S3RBT91e-138A0A0S3RBT9_PHAAN; Uncharacterized protein
STRINGXP_007136825.15e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.12e-21GATA transcription factor 16