PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang05g04440.1

Common Name

LR48_Vigan04g238400

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 260aa MW: 28766.2 Da PI: 8.0679

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g04440.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.6	5.7e-10	82	102	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++ G Ck+Gd+C+FaHg Vang05g04440.1 82 ACPDYRK-GNCKRGDTCQFAHG 102 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	1.3E-5	76	106	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.943	77	104	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.5E-8	77	103	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.8E-7	78	104	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.4E-8	81	102	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	41	112	135	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MTPNVQIPLW DSAAADGGPV SPFSPNAPDT ASFSTDHFRM FHFKVLTCPR GRAHDWTECP 60 YAHPAEKARR RDPRKFLYSA TACPDYRKGN CKRGDTCQFA HGVFECWLHP SRYRTHLCKD 120 GTNCRRRVCF FAHTNDQLRL TPDSSSLSSP TSVITSSFFD SPPSSPYVHN IQEIVSSMRN 180 VQLEDGLFSG LTRCVFGSTS GGILSGNGCE EEEPAMERVE SGRDIRARIY AKLSRENSIA 240 GSAPHVGWVS EPVNGFRGL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g04440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017420887.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 23-like
Swissprot	O82199	2e-74	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
Swissprot	O82307	9e-75	C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBL	A0A0L9UHL5	0.0	A0A0L9UHL5_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RBT0	0.0	A0A0S3RBT0_PHAAN; Uncharacterized protein
STRING	XP_007136803.1	1e-143	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2056	31	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25900.2	1e-73	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]