PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g05050.1
Common NameLR48_Vigan04g229200
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 187aa    MW: 21542.1 Da    PI: 4.6985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g05050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-182473255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr +k +g+Wv+eIr p++   r r++lg+++++e+Aa+a +aa  +l+g
  Vang05g05050.1 24 LYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDSPEKAARAFDAALFCLRG 73
                    59****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.88E-302383No hitNo description
SMARTSM003802.0E-322487IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-282482IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-202481IPR016177DNA-binding domain
PROSITE profilePS5103221.9572481IPR001471AP2/ERF domain
PRINTSPR003674.1E-92536IPR001471AP2/ERF domain
PfamPF008474.2E-112573IPR001471AP2/ERF domain
PRINTSPR003674.1E-94763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNMDTDMEKQ AMSGGGDCKS GEKLYKGVRK RKWGKWVSEI RLPNSRERIW LGSYDSPEKA  60
ARAFDAALFC LRGRRANFNF PNTPCNMDTN VPLPLPALQS LTPHEIQEVD HGDMDWTFLK  120
EFDYSNEVFP VGSDYDLYFE LHKMHSTSGE LLYSTPPPPP FEGYQELTEA EEDPFSHQSF  180
LWNWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-151491481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531KGVRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g05050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420481.15e-73PREDICTED: ethylene-responsive transcription factor ERF016-like
TrEMBLA0A0L9UHS43e-73A0A0L9UHS4_PHAAN; Uncharacterized protein
STRINGAES734983e-60(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.14e-38ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]