PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g05640.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 509aa    MW: 57256.8 Da    PI: 6.3045
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g05640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.15.3e-140815051374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+cA++v++g+le+a+a+L+++s laspdgd+mqR+aayf+e La r++++++++ +al++++ +    see+ ++klf+e++P+lk+++
  Vang05g05640.1  81 LIHLLLTCANHVAAGNLENANATLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRVT--MLSEEILVQKLFFELFPFLKVAY 173
                     689*************************************************************999887..69********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI+ea+ege+ +HiiD+++ + +QW+aLlq L++Rpegpp+lRiTg+++    +ke l ++++rL++ Ae+l++pf+fn+ v+++le+l+
  Vang05g05640.1 174 VLTNQAIVEAMEGEKVIHIIDLNAAEATQWIALLQVLSARPEGPPHLRITGIHQ----KKEILDQVAHRLTEEAEKLDIPFQFNP-VVSKLETLD 263
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll..............................................................desvslese 223
                     +++Lrvk+gEala++++lqlh+ll                                                              ++s+    +
  Vang05g05640.1 264 FDKLRVKTGEALAISSILQLHSLLafddealrrksprllkgsngihlqrvlplsqttlgdmlekdmingyspspdstssspasfttSNSM----N 354
                     ******************************************************************************999765333333....4 PP

            GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrer 318
                      +++L+++++lsPkv+ v+eq+++hn++++++r+leal+ y+alfd+le++++r+s er  vE++++g+ei+n++aceg +r+erhe+lekW +r
  Vang05g05640.1 355 MESFLNALWGLSPKVMAVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEGPDRKERHEKLEKWFQR 449
                     577******************************************************************************************** PP

            GRAS 319 leeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++aGF++vpls++ + qa++ ++ ++s+gyr+ +e+g+++++W+drp++s+SaWr
  Vang05g05640.1 450 FDQAGFGNVPLSYYGMLQARRFVQSYGSEGYRMRDENGCVLICWQDRPMFSISAWR 505
                     *******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.01755485IPR005202Transcription factor GRAS
PfamPF035141.8E-13781505IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
LDFSGGFVWI LLQFQNPPRD KRSLTAMRSS VGDLVSVEEG SSFVSSSRLQ LFSMMSLSPS  60
LGSPNNILLR EMKSEERGLY LIHLLLTCAN HVAAGNLENA NATLEQISLL ASPDGDTMQR  120
IAAYFMESLA DRILKTWPGI HRALNSTRVT MLSEEILVQK LFFELFPFLK VAYVLTNQAI  180
VEAMEGEKVI HIIDLNAAEA TQWIALLQVL SARPEGPPHL RITGIHQKKE ILDQVAHRLT  240
EEAEKLDIPF QFNPVVSKLE TLDFDKLRVK TGEALAISSI LQLHSLLAFD DEALRRKSPR  300
LLKGSNGIHL QRVLPLSQTT LGDMLEKDMI NGYSPSPDST SSSPASFTTS NSMNMESFLN  360
ALWGLSPKVM AVTEQDCNHN GPTLMDRLLE ALYSYAALFD CLESTVSRTS LERLRVEKMI  420
FGEEIKNIIA CEGPDRKERH EKLEKWFQRF DQAGFGNVPL SYYGMLQARR FVQSYGSEGY  480
RMRDENGCVL ICWQDRPMFS ISAWRSRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-52645072381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g05640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017433916.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0L9V7R20.0A0A0L9V7R2_PHAAN; Uncharacterized protein
STRINGXP_007131568.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]