PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang05g06490.1

Common Name

LR48_Vigan08g203700

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 423aa MW: 47994.4 Da PI: 6.8317

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang05g06490.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	325	1.5e-99	24	421	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaa.rlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL ecA + +sg++ a+++L +ls+laspdgd+mqR+a+yfteALa+ +la++ ++ k l+ ++ + + e+ +lf++ P+lk++h Vang05g06490.1 24 IQLLNECASFTESGNFIDADTALYNLSHLASPDGDSMQRVATYFTEALAHcQLAKNLRGVPKVLRLVRALS--TPEQQLLNQLFFDFYPFLKIAH 116 799*******************************************97578889999999997776653..556666789********* PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 ++N++I ea+ ge+++ ++D++ s+ QW +L+q L + ++p l+iT+ + +++ke le+++ rL+ Ae+l+ +f+fn+ v+++le+l+ Vang05g06490.1 117 TITNHTIIEAMRGETTINVLDLSPSNADQWSNLMQGLREHLTNTPYLKITVTAI--HEKKEVLEQMELRLKVEAERLNFHFKFNA-VVSSLESLD 208 *********************************************98888..449**********************.799** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrll...............................desvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254 +e+L +k+gE la+++vl+lh+ll ++ ++++ +++L+ +++l+Pkv+v++eqe++ n++s+ Vang05g06490.1 209 PETLPIKKGEPLAICCVLRLHSLLaanhdemvktkvqrafsemlinqspdsalspFSPCPSQK-MESFLNGLWRLRPKVMVITEQESNVNGASLR 302 *********************************************99998634444444.788************************ PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349 er+++al++y +lfd+lea+++r+ r+ +E++llg+ei+n+vaceg er+erhe+le+W rle aGF+ +++s++ a+ ll+ + gy Vang05g06490.1 303 ERVFKALSFYCTLFDCLEASASRTLIGRSLLEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGMASVSSNGIWLAEKLLQSYV-PGY 396 *************************************************************************************98.9 PP GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374 +++++++ l+++W++ pL+s+SaW+ Vang05g06490.1 397 HMHQKNQFLFICWEKIPLFSISAWK 421 ************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.804	1	402	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.2E-97	24	421	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MQKTGSQYHL QGSKDWDEDG IKIIQLLNEC ASFTESGNFI DADTALYNLS HLASPDGDSM 60 QRVATYFTEA LAHCQLAKNL RGVPKVLRLV RALSTPEQQL LNQLFFDFYP FLKIAHTITN 120 HTIIEAMRGE TTINVLDLSP SNADQWSNLM QGLREHLTNT PYLKITVTAI HEKKEVLEQM 180 ELRLKVEAER LNFHFKFNAV VSSLESLDPE TLPIKKGEPL AICCVLRLHS LLAANHDEMV 240 KTKVQRAFSE MLINQSPDSA LSPFSPCPSQ KMESFLNGLW RLRPKVMVIT EQESNVNGAS 300 LRERVFKALS FYCTLFDCLE ASASRTLIGR SLLEKMLLGE EIKNIVACEG VERKERHEKL 360 ETWIPRLELA GFGMASVSSN GIWLAEKLLQ SYVPGYHMHQ KNQFLFICWE KIPLFSISAW 420 KF*

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MQKTGSQYHL QGSKDWDEDG IKIIQLLNEC ASFTESGNFI DADTALYNLS HLASPDGDSM  60
QRVATYFTEA LAHCQLAKNL RGVPKVLRLV RALSTPEQQL LNQLFFDFYP FLKIAHTITN  120
HTIIEAMRGE TTINVLDLSP SNADQWSNLM QGLREHLTNT PYLKITVTAI HEKKEVLEQM  180
ELRLKVEAER LNFHFKFNAV VSSLESLDPE TLPIKKGEPL AICCVLRLHS LLAANHDEMV  240
KTKVQRAFSE MLINQSPDSA LSPFSPCPSQ KMESFLNGLW RLRPKVMVIT EQESNVNGAS  300
LRERVFKALS FYCTLFDCLE ASASRTLIGR SLLEKMLLGE EIKNIVACEG VERKERHEKL  360
ETWIPRLELA GFGMASVSSN GIWLAEKLLQ SYVPGYHMHQ KNQFLFICWE KIPLFSISAW  420
KF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-34	17	420	13	378	Protein SCARECROW
5b3h_A	2e-34	17	420	12	377	Protein SCARECROW
5b3h_D	2e-34	17	420	12	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang05g06490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	0.0	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017432109.1	0.0	PREDICTED: scarecrow-like protein 3
TrEMBL	A0A0L9V7Z8	0.0	A0A0L9V7Z8_PHAAN; Uncharacterized protein
STRING	XP_007131457.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16325	7	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	1e-111	scarecrow-like 3

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]