PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g07260.1
Common NameLR48_Vigan08g211700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17460.3 Da    PI: 9.5687
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g07260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.94e-26958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien+  rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  Vang05g07260.1  9 KRIENSVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                    79*********************************************965 PP
2K-box42.33.2e-15721244799
           K-box  47 slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     ++ eLq Le+++e+ + +iRs K++++l++ie l+ ke  l+ +nk+L+ k+ 
  Vang05g07260.1  72 TIDELQVLEKNMETWIYHIRSMKTNIMLQEIEALKDKEGTLKAANKYLHDKIV 124
                     689***********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.969161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-25161IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-35160IPR002100Transcription factor, MADS-box
CDDcd002652.37E-35261No hitNo description
PRINTSPR004049.1E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-221056IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.36522129IPR002487Transcription factor, K-box
PRINTSPR004049.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014865.5E-1463123IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MARGKVQLKR IENSVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GYLFGGGNKT STIDELQVLE KNMETWIYHI RSMKTNIMLQ EIEALKDKEG TLKAANKYLH  120
DKIVENAAIH NFAQFPTDVP YPLIIQDGTF QLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-16159159MEF2C
5f28_B6e-16159159MEF2C
5f28_C6e-16159159MEF2C
5f28_D6e-16159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang05g07260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150397e-98AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017432804.11e-102PREDICTED: agamous-like MADS-box protein AGL12
SwissprotA2YQK93e-50MAD26_ORYSI; MADS-box transcription factor 26
SwissprotQ0J8G83e-50MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBLA0A0L9V8791e-101A0A0L9V879_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SES21e-101A0A0S3SES2_PHAAN; Uncharacterized protein
STRINGXP_007131342.11e-88(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.13e-51AGAMOUS-like 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Lee S, et al.
    Further characterization of a rice AGL12 group MADS-box gene, OsMADS26.
    Plant Physiol., 2008. 147(1): p. 156-68
    [PMID:18354041]
  3. Khong GN, et al.
    OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice.
    Plant Physiol., 2015. 169(4): p. 2935-49
    [PMID:26424158]
  4. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]