PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0689s00020.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRF
Protein Properties Length: 240aa    MW: 26356.2 Da    PI: 7.0082
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0689s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC44.62.4e-1487112126
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkk 26 
                       d+epgrCrRtDGKkWRCsr+++eg++
  Vang0689s00020.1  87 DPEPGRCRRTDGKKWRCSREAVEGQN 112
                       79*********************985 PP
2QLQ52.21.9e-182257237
               QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                       F+ aQ+q+L+ Q l+++y++a+ PvPp+Llq+i+k
  Vang0689s00020.1 22 CFSFAQWQELELQTLIFRYMLAGTPVPPQLLQPIKK 57
                      6*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.0E-102157IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.9352257IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088808.5E-142355IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166715.58187132IPR014977WRC domain
PfamPF088798.2E-1188111IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
LPPFSDSTLT SAPPRFPRME SCFSFAQWQE LELQTLIFRY MLAGTPVPPQ LLQPIKKSFF  60
HSPPPFLQLY HPPLLESGYY WGREALDPEP GRCRRTDGKK WRCSREAVEG QNSTGAKSDS  120
KSLSENHDHV DGNGRSDGHV LRHFFDDWPR TLQEQDHSKS NGSQNNNTGT YLSMSTQGIT  180
SSDVSLRLST GHAENTSHVA SVGGPLAEAL RSSTSTSSPT SVLLQLPTSS ACNTSFIST*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:22419826}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0689s00020.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:22419826}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0157460.0AP015746.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_0702, complete sequence, cultivar: Shumari.
GenBankAP0160850.0AP016085.1 Vigna angularis var. angularis DNA, scaffold: Scaffold_1041, complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414131.11e-146PREDICTED: growth-regulating factor 3-like
SwissprotQ9SJR56e-36GRF3_ARATH; Growth-regulating factor 3
TrEMBLA0A0L9TWX81e-145A0A0L9TWX8_PHAAN; Uncharacterized protein
STRINGXP_007145239.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78953242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36400.15e-38growth-regulating factor 3
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  3. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  4. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]