PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g02170.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HB-PHD
Protein Properties Length: 891aa    MW: 99015 Da    PI: 5.3172
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g02170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox38.61.9e-127097541156
                     HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++L   F++n+yp+++++e LA++lgLt +qV  WF N R   +
  Vang06g02170.1 709 VVQRLHISFKENQYPDRATKESLAQELGLTYQQVGKWFDNTRWSFR 754
                     6789999***********************************8766 PP
2PHD30.49e-11405460151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++    ++++++lCdg C++ fH+ Cl ++l +e++p +   wlC+ C++k
  Vang06g02170.1 405 FCAKCHSkeLSSNNDIILCDGvCDRGFHQLCLCPPLLTEDIPPDdeGWLCPGCDCK 460
                     6999*9977777********77*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.38E-11395463IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.4E-11402459IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.611403460IPR019787Zinc finger, PHD-finger
PfamPF006283.2E-8405460IPR019787Zinc finger, PHD-finger
SMARTSM002497.3E-7405458IPR001965Zinc finger, PHD-type
CDDcd155042.81E-26405457No hitNo description
PROSITE patternPS013590406457IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003893.1E-12697760IPR001356Homeobox domain
CDDcd000863.04E-12704757No hitNo description
SuperFamilySSF466899.84E-12705759IPR009057Homeodomain-like
PfamPF000465.4E-10708754IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.6E-13709759IPR009057Homeodomain-like
PROSITE profilePS5007112.924710756IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
LSLSFSLSPS PSSLCSQSPF QIEPFFFLHP FPFAVVTALS SSPPRLLDSH LDYSGGCCGV  60
RFFLGPMTRP FGELTSNNSA AGRMSTEQSE LSEKTQLGTE HLLKEQRESG TVLTSSVIHE  120
KSNQVSANAT ENSVILLPAP PQHDSEKNCQ TVEGSHLQQS TDKEVSLQLS NDKPENPSQP  180
LSENEPVESV SASAGDGQKQ FSPAQANTSY VNKLLDPPSE EVVTSISEKV SNSPANSQLR  240
RKGKKNSKLL KKTYMLRSIG SSDRALRSKT KENPKTPEPS SNLVDFNNNN SNGGGKRKTS  300
RKKRKSGEVG ITDQFSRIKS HLRYLLNRIS YEKSLIDAYS GEGWKGYSME KLKPEKELQR  360
AKSEILRRKL NIRDLFRDLD SLCAEGKLPE SLFDSEGEID SEDIFCAKCH SKELSSNNDI  420
ILCDGVCDRG FHQLCLCPPL LTEDIPPDDE GWLCPGCDCK DDCMDLINDS FGTSLSISDT  480
WEESDYASAS ENLEGSHGDQ YLGLPSEDSD DGDYDPAAPD VDNKVNEESS SSDFTSDSED  540
LAAAIVDNTS PGQDEEIRSA SLDDVKHLRS YGKKKGKAGK KLSMAVELSS LLEPDSGQEG  600
SILVSGKRNL ERLDYKKLYD ETYHSDTSED EDWTATVTPS RKKKDNATPV SPNGNASNNS  660
MHTPKRNGHQ NKFENTKNSP AKSLDRDVKF DSREQTSRSP GGNRLREAVV QRLHISFKEN  720
QYPDRATKES LAQELGLTYQ QVGKWFDNTR WSFRHSSQAN SGRNTLRKAT DSRAENECES  780
PEIVIPWDDQ LGSRWICFHS GRVDFFGNPS LLKMFVLLCV AGWGIIYFNC CRLLIMLRSY  840
FSCPNECPGT DTHDDKLSVM CYLVDYCVYL WKLGLSQHQR VMMLARVELG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243251KKNSKLLKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g02170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017415108.10.0PREDICTED: homeobox protein HAT3.1
TrEMBLA0A0S3SM470.0A0A0S3SM47_PHAAN; Uncharacterized protein
STRINGXP_007143079.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.18e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain