PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g02440.1

Common Name

LR48_Vigan02g237100

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 168aa MW: 18490.3 Da PI: 9.8379

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g02440.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98	9.2e-31	2	101	1	95
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C+l+ ++ p++q++++ +v+k+FG++ ++++l+a+p ++r+++++sl+yeA r+ +Pv+Gavg+++++++ql+q+ Vang06g02440.1 2 SCNGCRVLRKGCSENCMLRHCLqlienPQAQAHATLFVAKFFGRAALMSFLSAVPANQRSALFQSLLYEAVGRTINPVNGAVGLLWSGNWQLCQM 96 6*********************************************************************************************9 PP DUF260 91 kaela 95 +e + Vang06g02440.1 97 GVEKV 101 88765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.861	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.1E-27	2	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCMLR HCLQLIENPQ AQAHATLFVA KFFGRAALMS FLSAVPANQR 60 SALFQSLLYE AVGRTINPVN GAVGLLWSGN WQLCQMGVEK VLRGGAVLTP LPHFLSSVDV 120 HHQHHVTERA KKQRVGTPSQ ESETSYMGRK PQDSAPQSQR NLLTLFF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g02440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-110	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414955.1	1e-119	PREDICTED: LOB domain-containing protein 38-like isoform X1
Swissprot	Q9SN23	1e-59	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A0L9U0D7	1e-117	A0A0L9U0D7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SM87	1e-117	A0A0S3SM87_PHAAN; Uncharacterized protein
STRING	XP_007143107.1	1e-106	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	5e-62	LOB domain-containing protein 38

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]