PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g04080.2
Common NameLR48_Vigan02g275000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 243aa    MW: 27759.3 Da    PI: 7.8298
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g04080.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B384.87.8e-2796189182
                     EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                     f+k+ltpsdv+k++rlv+pkk+a ++            +++   ++++ ++d+  r+W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++ F
  Vang06g04080.2  96 FQKELTPSDVGKLNRLVIPKKHAVTYfpnvcdggaeshEENVSADVEVAFYDRLMRQWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTIAF 189
                     99******************************99887744555889*********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-7131IPR001471AP2/ERF domain
PROSITE profilePS510329.993131IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-6133IPR016177DNA-binding domain
Gene3DG3DSA:2.40.330.101.3E-3093191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-2594192IPR015300DNA-binding pseudobarrel domain
CDDcd100174.16E-2395189No hitNo description
SMARTSM010194.1E-1996200IPR003340B3 DNA binding domain
PfamPF023626.1E-2496189IPR003340B3 DNA binding domain
PROSITE profilePS5086311.29396215IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
LGTFKSEREA AMAYDSASIK LRNGDSHRNF PWNDQTVQEP QFQSHYSTET MLSMIRDGTY  60
PSRFATFLST RQQGGVLKHV TLKDDGKEQL CCTQLFQKEL TPSDVGKLNR LVIPKKHAVT  120
YFPNVCDGGA ESHEENVSAD VEVAFYDRLM RQWKFRYCYW KSSQSYVFTR GWNRFVKDKK  180
LKAKDTIAFF TCEPVDCRKG GEGEAFGLID VIYSSDEDTK DEHTLKDLNA EKGLKLFGVL  240
IK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-2794192696B3 domain-containing transcription factor NGA1
5os9_B5e-2794192696B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g04080.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413266.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6886e-81RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A0L9U1E20.0A0A0L9U1E2_PHAAN; Uncharacterized protein
STRINGXP_007142618.11e-140(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.12e-83RAV family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]