PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g04090.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 305aa    MW: 32543.2 Da    PI: 8.4967
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g04090.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.2e-11238283655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Vang06g04090.1 238 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 283
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.46E-15235298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-11236287No hitNo description
Gene3DG3DSA:4.10.280.105.1E-14237295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13238288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8238283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MYPSSSSSSS SSSSSQSMSH APTGLTRYGS APGSLLTTTV DALIGGSRPT PTPTPYYSGG  60
DSSDSTCKDQ TSYHNHALGS ALLRQKSSPA GFLSHLASTA TAPTPNHNHN GAGFTITRGS  120
RLKSQLSFTG HCQESLCGGD NTNNVVLGDH ATFGMEPWDG SHSHSNSIAF SAPPTKRSKS  180
SNSSEQDILH CLNALESQFS LPQTTLEMAT VEKLLHIPED SVPCKIRAKR GCATHPRSIA  240
ERERRTRISG KLKKLQDLVP NMDKQTSYAD MLDLAVQHIK GLQTQVQKLH KELENCTCGC  300
TQSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g04090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017414598.10.0PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1027e-69BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0S3SKZ90.0A0A0S3SKZ9_PHAAN; Uncharacterized protein
STRINGXP_007142611.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.18e-71bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]