PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g04340.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 223aa    MW: 25172.3 Da    PI: 9.1134
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g04340.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.89.3e-2114752586
        trihelix 25 klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     + +p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++es s +++ ++l+
  Vang06g04340.1 14 GQVEPKWASVSSYCRKHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIREESDSFWVMRNDLR 75
                    4779*******************************************9999999*9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.9E-101870No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MRRGRTAGLP LGSGQVEPKW ASVSSYCRKH GVNRGPVQCR KRWSNLAGDY KKIKEWESQI  60
REESDSFWVM RNDLRRDRKL PGFFDKEVYD ILDSGSQDFE QDEVSASPEK KDIFPPSNRD  120
FPAPIPISGV TNEKQSTPNP EMGSTSQGER KRKRLSTDGG EETLQIHLID VLERNGKMLS  180
AQLEAQNINF QLDREQRKIN GSNLVAVLDK LADALGRIAD KL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g04340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-160AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027936927.11e-136trihelix transcription factor ASR3-like
SwissprotQ8VZ203e-87ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLI1LFM11e-121I1LFM1_SOYBN; Uncharacterized protein
STRINGGLYMA10G44620.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-80Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]