PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g04900.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 620aa    MW: 69522.5 Da    PI: 8.1295
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g04900.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34.2e-141562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd +l +++ + G g+W++++ + g+ R++k+c++rw +yl
   Vang06g04900.1 15 KGLWSPEEDNKLRNYILKQGHGCWSSVPIKAGLQRSGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding54.62.5e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T++E+e ++ ++++lG++ W+ I+++++ gRt++++k++w++yl
   Vang06g04900.1  68 RGKFTKQEEETILTLHHMLGNK-WSQISQHLP-GRTDNEIKNYWHSYL 113
                      89********************.*********.************997 PP
3Myb_DNA-binding60.92.7e-19315362148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEd+ lvd++k++G g+W+t +++ g+ R++k+c++rw +yl
   Vang06g04900.1 315 RGAWTPEEDQALVDYIKEHGHGSWRTLPKHAGLLRCGKSCRLRWINYL 362
                      89******************************99************97 PP
4Myb_DNA-binding52.61.1e-16368413148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  +v+++ +lG++ W++Ia+ ++ gRt++++k++w+++l
   Vang06g04900.1 368 RGPFTSEEESTIVQLHGMLGNR-WAAIASQLP-GRTDNEIKNYWNTHL 413
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6241062IPR017930Myb domain
SuperFamilySSF466895.5E-2812109IPR009057Homeodomain-like
SMARTSM007176.5E-111464IPR001005SANT/Myb domain
PfamPF002495.0E-131562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-211669IPR009057Homeodomain-like
CDDcd001671.13E-81862No hitNo description
PROSITE profilePS5129426.66163117IPR017930Myb domain
SMARTSM007171.1E-1667115IPR001005SANT/Myb domain
PfamPF002491.9E-1668113IPR001005SANT/Myb domain
CDDcd001675.82E-1170113No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2570116IPR009057Homeodomain-like
PROSITE patternPS000860215224IPR017972Cytochrome P450, conserved site
Gene3DG3DSA:1.10.10.608.5E-24306364IPR009057Homeodomain-like
PROSITE profilePS5129418.401310362IPR017930Myb domain
SuperFamilySSF466891.24E-30312409IPR009057Homeodomain-like
SMARTSM007176.3E-15314364IPR001005SANT/Myb domain
PfamPF002497.9E-17315362IPR001005SANT/Myb domain
CDDcd001672.21E-11317362No hitNo description
PROSITE profilePS5129425.272363417IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-26365417IPR009057Homeodomain-like
SMARTSM007173.2E-16367415IPR001005SANT/Myb domain
PfamPF002493.8E-15368413IPR001005SANT/Myb domain
CDDcd001671.48E-10370413No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MGCQPLEKGK PKHKKGLWSP EEDNKLRNYI LKQGHGCWSS VPIKAGLQRS GKSCRLRWIN  60
YLRPGLKRGK FTKQEEETIL TLHHMLGNKW SQISQHLPGR TDNEIKNYWH SYLKKKEAKA  120
KEMDSHNQIK YASSSSDTME SSNSLKNLAT QGTQSCNFTK EASQSSLPKL LFAEWLSLDQ  180
VNSANSVDSF GLRNGFDQNS TLQEAAIHDM SDIPFGGGYH RCLANISAPE ILNSELKYAN  240
QMAENGFIHC VPGVDLMSSN FSMSNDAIIY AYSSFIYLSP CARGNPSLIL PTMVTLTIPS  300
EMGKTPCCEK HGVKRGAWTP EEDQALVDYI KEHGHGSWRT LPKHAGLLRC GKSCRLRWIN  360
YLRPGIKRGP FTSEEESTIV QLHGMLGNRW AAIASQLPGR TDNEIKNYWN THLKKRLLRS  420
CHSLREKQSC LVLDQTIVKS ESPSTRHMVQ WESVRVEAEA RLSMESSFLN SWPKSSTCPD  480
HFLHLWHSEV GKSFRMVKGK EGIVSQSPVS HPSSSSKLES CSDVSLQVKN STSSLYPCIE  540
DVNMVHEQIS SYKPKLDDTA GSDSGNYEFL DTSDSALKHL LHISDDVGFL GQNDNFLNLL  600
DATCDQDSFF HISSEKGNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2794171108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g04900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412267.10.0PREDICTED: transcription factor MYB3-like
RefseqXP_017412268.10.0PREDICTED: transcription factor MYB3-like
SwissprotQ9M2D97e-89MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A371ICS00.0A0A371ICS0_MUCPR; Transcription factor MYB41 (Fragment)
STRINGXP_007143400.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.19e-86myb domain protein 17