PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g05160.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 189aa MW: 21212.7 Da PI: 4.5471

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g05160.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.9	2.5e-36	98	162	3	66
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.s 66 +kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+L fdk+s+t+eWL+++++ aikel+++ + Vang06g05160.1 98 AKKDRHSKIHTSQGLRDRRVRLSSEIARKFFDLQDMLEFDKPSNTLEWLFTKSENAIKELAQNwD 162 79***********************************************************9951 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.5E-35	98	163	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.814	99	157	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MFSSTYDSNL FPNFPSSSYP ILPFLIDPEN DFASNTLFDD PLLVPFTPIT HDPPFPEETV 60 ANFAVADCTA ILEQDANTNY GSHNGSMSNF LTQKPAIAKK DRHSKIHTSQ GLRDRRVRLS 120 SEIARKFFDL QDMLEFDKPS NTLEWLFTKS ENAIKELAQN WDTNGAFTGY SNFCSIGTMN 180 LSTCFMNP*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269\|PubMed:16236768, ECO:0000269\|PubMed:8893002}.
UniProt	Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g05160.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014523924.1	1e-112	transcription factor DICHOTOMA-like
Refseq	XP_027933862.1	1e-112	transcription factor DICHOTOMA-like
Swissprot	O49250	1e-25	CYCLD_ANTMA; Transcription factor CYCLOIDEA
Swissprot	Q9SBV6	8e-26	CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment)
TrEMBL	A0A0S3SMV7	1e-111	A0A0S3SMV7_PHAAN; Uncharacterized protein
TrEMBL	A0A1S3W0Y8	1e-110	A0A1S3W0Y8_VIGRR; transcription factor DICHOTOMA-like
TrEMBL	A0A4D6N865	1e-110	A0A4D6N865_VIGUN; Transcription factor
STRING	XP_007143293.1	1e-107	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	1e-26	TCP family protein

Publications ? help Back to Top
Vieira CP,Vieira J,Charlesworth D Evolution of the cycloidea gene family in Antirrhinum and Misopates. Mol. Biol. Evol., 1999. 16(11): p. 1474-83 [PMID:10555278] Gubitz T,Caldwell A,Hudson A Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives. Mol. Biol. Evol., 2003. 20(9): p. 1537-44 [PMID:12832647] Reeves PA,Olmstead RG Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution. Mol. Biol. Evol., 2003. 20(12): p. 1997-2009 [PMID:12885953] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Luo D,Carpenter R,Vincent C,Copsey L,Coen E Origin of floral asymmetry in Antirrhinum. Nature, 1996. 383(6603): p. 794-9 [PMID:8893002]