PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g05630.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23644.9 Da    PI: 8.3699
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g05630.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+ yss
  Vang06g05630.1  9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSS 59
                    69***********************************************96 PP
2K-box49.32.1e-17811381168
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRsk 68 
                     ++ + +++qel  L+ ++e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++
  Vang06g05630.1  81 DEAEHQSEQELLVLRVKYESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLAQARKH 138
                     44556689*********************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-31273IPR002100Transcription factor, MADS-box
CDDcd002653.36E-40271No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.2E-1383138IPR002487Transcription factor, K-box
PROSITE profilePS5129710.0284186IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALIIFSS RGKLFQYSST  60
DINRIIEKYR QRCFDMSQIG DEAEHQSEQE LLVLRVKYES LQRTQRNLLG EELEPLSMKE  120
LHSLEKQLDR TLAQARKHLV CNLEQINRNL ESKNIGKCTH CEDYTNQFEA GAATSLRLQQ  180
EQITSKGKEV DTRCLNDNNE WQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-25169169MEF2C
5f28_B4e-25169169MEF2C
5f28_C4e-25169169MEF2C
5f28_D4e-25169169MEF2C
6byy_A3e-25169169MEF2 CHIMERA
6byy_B3e-25169169MEF2 CHIMERA
6byy_C3e-25169169MEF2 CHIMERA
6byy_D3e-25169169MEF2 CHIMERA
6bz1_A3e-25169169MEF2 CHIMERA
6bz1_B3e-25169169MEF2 CHIMERA
6bz1_C3e-25169169MEF2 CHIMERA
6bz1_D3e-25169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g05630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987531e-156BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014513170.11e-133MADS-box transcription factor 17 isoform X1
SwissprotQ8LLR12e-54MADS3_VITVI; Agamous-like MADS-box protein MADS3
TrEMBLA0A0S3SMV41e-139A0A0S3SMV4_PHAAN; Uncharacterized protein
STRINGGLYMA10G38580.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.13e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]