PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g07140.1

Common Name

LR48_Vigan02g191300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

LBD

Protein Properties

Length: 95aa MW: 10571.1 Da PI: 4.1591

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g07140.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	42.3	2.1e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Vang06g07140.1 1 MVYEANARIRDPVYGCAGAICQLQKQVSELQAQLAKAQAE 40 69**********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.7E-11	1	38	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	9.466	1	41	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 95 aa Download sequence Send to blast
MVYEANARIR DPVYGCAGAI CQLQKQVSEL QAQLAKAQAE VVNIQCQQAN LVALICMEMS 60 ETQEQHMVQP QPHIDMSCFI EDNSFGTAWE PLWT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g07140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-158	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017414151.1	2e-65	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-27	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A0L9TYU2	4e-64	A0A0L9TYU2_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SNT9	4e-64	A0A0S3SNT9_PHAAN; Uncharacterized protein
STRING	GLYMA20G31780.1	5e-60	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF37341	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-22	LOB domain-containing protein 1

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]