PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08560.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 332aa    MW: 36668.6 Da    PI: 5.6127
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08560.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS271.62.6e-8365330103373
            GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                     l +v+++ ++ ++Dfdi++G Q+++Ll++L+ R++g p  ++i +v +++    e++++ g  L ++Ae+lg+ fef+v +++r+++l+ e+L +
  Vang06g08560.2  65 LTEVAKNPKLCVVDFDIGNGKQYASLLHELSLRRKGYPaVVKIIAVTENS--ADERMSSAGVMLGRLAEQLGIGFEFKV-LTQRIAELTRESLGC 156
                     45678889999********************999776659********55..999************************.699************ PP

            GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                     + +EalaVn++++l++++desvs+e++rde+L+ vk l P+vv++veqe+++n+++F++r++e++ yy alfdsle+++ re+++rik+E+  l+
  Vang06g08560.2 157 EADEALAVNFAFRLYKIPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSWRIKMEEG-LS 250
                     ********************************************************************************************.** PP

            GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     r+i n vaceg+er+er+e ++kWr+r+++aGF+  pls+++a+++k  l   + +  +v+ e+g +++gW++r+L+++SaW
  Vang06g08560.2 251 RKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGEN-R-VTVKVEKGGICFGWMGRTLTVASAW 330
                     **************************************************9998.4.89*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.3621313IPR005202Transcription factor GRAS
PfamPF035148.9E-8165330IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
LEKELLEDND DDQSDAVSVV TTSEWSHTIQ NLITPPKRAS SSPSSSTTTT SSNSSVESIN  60
VIQSLTEVAK NPKLCVVDFD IGNGKQYASL LHELSLRRKG YPAVVKIIAV TENSADERMS  120
SAGVMLGRLA EQLGIGFEFK VLTQRIAELT RESLGCEADE ALAVNFAFRL YKIPDESVST  180
ENPRDELLRR VKALAPRVVT LVEQESNTNT APFVARVAES CAYYGALFDS LETTMTRENS  240
WRIKMEEGLS RKIANTVACE GRERVERCEV FGKWRARMDM AGFRLKPLSQ RVAESIKERL  300
GGENRVTVKV EKGGICFGWM GRTLTVASAW C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-3473330110374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08560.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413373.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-105SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0L9TZG30.0A0A0L9TZG3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SN640.0A0A0S3SN64_PHAAN; Uncharacterized protein
STRINGXP_007143458.11e-173(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-96SCARECROW-like 8