PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08560.3
Common NameLR48_Vigan02g208500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 602aa    MW: 66899.5 Da    PI: 6.9848
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08560.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.47.1e-912456002373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+e+A+a+s++ +e a+++          ++++ qR + +++ AL++r+++     ++   p + +e    e++ +++l++e s +++++ +
  Vang06g08560.3 245 IQSLTEVAKAISEERFEVATQI--------RFSQNSDQRFVNCMVSALKSRMSH-----AEY--PPPVEELFGREHAESTQLLFEHSLFFRVALM 324
                     5778888888888888888876........2345678****************9.....322..3333334599999****************** PP

            GRAS  97 taNqaIleav.ege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +aN aIle++ + +    ++ ++Dfdi++G Q+++Ll++L+ R++g p  ++i +v +++    e++++ g  L ++Ae+lg+ fef+v +++r+
  Vang06g08560.3 325 VANIAILESAfDDKtqnPKLCVVDFDIGNGKQYASLLHELSLRRKGYPaVVKIIAVTENS--ADERMSSAGVMLGRLAEQLGIGFEFKV-LTQRI 416
                     *******9752444555899*********************999776659********55..999************************.699** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++l+ e+L ++ +EalaVn++++l++++desvs+e++rde+L+ vk l P+vv++veqe+++n+++F++r++e++ yy alfdsle+++ re+++
  Vang06g08560.3 417 AELTRESLGCEADEALAVNFAFRLYKIPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSW 511
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     rik+E+  l+r+i n vaceg+er+er+e ++kWr+r+++aGF+  pls+++a+++k  l   + +  +v+ e+g +++gW++r+L+++SaW
  Vang06g08560.3 512 RIKMEEG-LSRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGEN-R-VTVKVEKGGICFGWMGRTLTVASAW 600
                     *******.****************************************************9998.4.89*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.22196583IPR005202Transcription factor GRAS
PfamPF035142.5E-88245600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSPPGFPAAG PSDFYGGATG FPTQSMAVTP TIDNHSATTH HPLYRSQPSI MLHPSSNIPK  60
HQTSSLIGKR TLAEFQTHNL TNTISNNLLV SNNNNQLLTN YQFRSVKPRT FQHNQFPTFS  120
PELAALPSHR YGASLLHHIR PNALNPQPVT SSILSHTNFS PVQSRLTATL ESEKNFIDHR  180
LQELEKELLE DNDDDQSDAV SVVTTSEWSH TIQNLITPPK RASSSPSSST TTTSSNSSVE  240
SINVIQSLTE VAKAISEERF EVATQIRFSQ NSDQRFVNCM VSALKSRMSH AEYPPPVEEL  300
FGREHAESTQ LLFEHSLFFR VALMVANIAI LESAFDDKTQ NPKLCVVDFD IGNGKQYASL  360
LHELSLRRKG YPAVVKIIAV TENSADERMS SAGVMLGRLA EQLGIGFEFK VLTQRIAELT  420
RESLGCEADE ALAVNFAFRL YKIPDESVST ENPRDELLRR VKALAPRVVT LVEQESNTNT  480
APFVARVAES CAYYGALFDS LETTMTRENS WRIKMEEGLS RKIANTVACE GRERVERCEV  540
FGKWRARMDM AGFRLKPLSQ RVAESIKERL GGENRVTVKV EKGGICFGWM GRTLTVASAW  600
C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-342416001374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08560.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413373.10.0PREDICTED: scarecrow-like protein 8
TrEMBLA0A0L9TZG30.0A0A0L9TZG3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SN640.0A0A0S3SN64_PHAAN; Uncharacterized protein
STRINGXP_007143458.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-123SCARECROW-like 8
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]