PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08560.4
Common NameLR48_Vigan02g208500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 419aa    MW: 46644.9 Da    PI: 5.2846
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08560.4genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.12.3e-91624172373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++ L+e+A+a+s++ +e a+++          ++++ qR + +++ AL++r+++     ++   p + +e    e++ +++l++e s +++++ +
  Vang06g08560.4  62 IQSLTEVAKAISEERFEVATQI--------RFSQNSDQRFVNCMVSALKSRMSH-----AEY--PPPVEELFGREHAESTQLLFEHSLFFRVALM 141
                     5778888999988888888876........2345678****************9.....322..3333334599999****************** PP

            GRAS  97 taNqaIleav.ege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +aN aIle++ + +    ++ ++Dfdi++G Q+++Ll++L+ R++g p  ++i +v +++    e++++ g  L ++Ae+lg+ fef+v +++r+
  Vang06g08560.4 142 VANIAILESAfDDKtqnPKLCVVDFDIGNGKQYASLLHELSLRRKGYPaVVKIIAVTENS--ADERMSSAGVMLGRLAEQLGIGFEFKV-LTQRI 233
                     *******9752444555899*********************999776659********55..999************************.699** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     ++l+ e+L ++ +EalaVn++++l++++desvs+e++rde+L+ vk l P+vv++veqe+++n+++F++r++e++ yy alfdsle+++ re+++
  Vang06g08560.4 234 AELTRESLGCEADEALAVNFAFRLYKIPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAESCAYYGALFDSLETTMTRENSW 328
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     rik+E+  l+r+i n vaceg+er+er+e ++kWr+r+++aGF+  pls+++a+++k  l   + +  +v+ e+g +++gW++r+L+++SaW
  Vang06g08560.4 329 RIKMEEG-LSRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGEN-R-VTVKVEKGGICFGWMGRTLTVASAW 417
                     *******.****************************************************9998.4.89*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.2213400IPR005202Transcription factor GRAS
PfamPF035147.8E-8962417IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
LEKELLEDND DDQSDAVSVV TTSEWSHTIQ NLITPPKRAS SSPSSSTTTT SSNSSVESIN  60
VIQSLTEVAK AISEERFEVA TQIRFSQNSD QRFVNCMVSA LKSRMSHAEY PPPVEELFGR  120
EHAESTQLLF EHSLFFRVAL MVANIAILES AFDDKTQNPK LCVVDFDIGN GKQYASLLHE  180
LSLRRKGYPA VVKIIAVTEN SADERMSSAG VMLGRLAEQL GIGFEFKVLT QRIAELTRES  240
LGCEADEALA VNFAFRLYKI PDESVSTENP RDELLRRVKA LAPRVVTLVE QESNTNTAPF  300
VARVAESCAY YGALFDSLET TMTRENSWRI KMEEGLSRKI ANTVACEGRE RVERCEVFGK  360
WRARMDMAGF RLKPLSQRVA ESIKERLGGE NRVTVKVEKG GICFGWMGRT LTVASAWC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-36584171374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g08560.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017413373.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR71e-131SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0L9TZG30.0A0A0L9TZG3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SN640.0A0A0S3SN64_PHAAN; Uncharacterized protein
STRINGXP_007143458.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-121SCARECROW-like 8
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]