PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g08560.5

Common Name

LR48_Vigan02g208500

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 303aa MW: 33870.9 Da PI: 7.7322

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g08560.5	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	286.2	9.1e-88	5	301	76	373
GRAS 76 eelaalklfsevsPilkfshltaNqaIleav.ege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerL 165 e++ +++l++e s +++++ ++aN aIle++ + + ++ ++Dfdi++G Q+++Ll++L+ R++g p ++i +v +++ e++++ g L Vang06g08560.5 5 EHAESTQLLFEHSLFFRVALMVANIAILESAfDDKtqnPKLCVVDFDIGNGKQYASLLHELSLRRKGYPaVVKIIAVTENS--ADERMSSAGVML 97 6778999*******************9752444555899*****************999776659****55..999***** PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 ++Ae+lg+ fef+v +++r+++l+ e+L ++ +EalaVn++++l++++desvs+e++rde+L+ vk l P+vv++veqe+++n+++F++r++e+ Vang06g08560.5 98 GRLAEQLGIGFEFKV-LTQRIAELTRESLGCEADEALAVNFAFRLYKIPDESVSTENPRDELLRRVKALAPRVVTLVEQESNTNTAPFVARVAES 191 ***********.699************************************************************************ PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 + yy alfdsle+++ re+++rik+E+ l+r+i n vaceg+er+er+e ++kWr+r+++aGF+ pls+++a+++k l + + +v+ e+ Vang06g08560.5 192 CAYYGALFDSLETTMTRENSWRIKMEEG-LSRKIANTVACEGRERVERCEVFGKWRARMDMAGFRLKPLSQRVAESIKERLGGEN-R-VTVKVEK 283 ************************.************************************************9998.4.89* PP GRAS 356 gslvlgWkdrpLvsvSaW 373 g +++gW++r+L+++SaW Vang06g08560.5 284 GGICFGWMGRTLTVASAW 301 **************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.066	1	284	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.1E-85	5	301	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
LFGREHAEST QLLFEHSLFF RVALMVANIA ILESAFDDKT QNPKLCVVDF DIGNGKQYAS 60 LLHELSLRRK GYPAVVKIIA VTENSADERM SSAGVMLGRL AEQLGIGFEF KVLTQRIAEL 120 TRESLGCEAD EALAVNFAFR LYKIPDESVS TENPRDELLR RVKALAPRVV TLVEQESNTN 180 TAPFVARVAE SCAYYGALFD SLETTMTREN SWRIKMEEGL SRKIANTVAC EGRERVERCE 240 VFGKWRARMD MAGFRLKPLS QRVAESIKER LGGENRVTVK VEKGGICFGW MGRTLTVASA 300 WC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-36	19	301	89	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g08560.5

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017413373.1	0.0	PREDICTED: scarecrow-like protein 8
Swissprot	Q9FYR7	1e-116	SCL8_ARATH; Scarecrow-like protein 8
TrEMBL	A0A0L9TZG3	0.0	A0A0L9TZG3_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SN64	0.0	A0A0S3SN64_PHAAN; Uncharacterized protein
STRING	XP_007143458.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	1e-108	SCARECROW-like 8

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]