PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09170.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 204aa    MW: 23133.1 Da    PI: 8.052
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09170.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17110160255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ + +Aaka++ a+ +++g
  Vang06g09170.1 110 RYRGVRRRP-WGKFAAEIRDP---KrKGSRVWLGTYDCEIDAAKAYDCAAFRMRG 160
                     7********.**********8...4334**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.775110168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30110169IPR001471AP2/ERF domain
SMARTSM003802.0E-34110174IPR001471AP2/ERF domain
PfamPF008477.1E-13110160IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21110170IPR016177DNA-binding domain
PRINTSPR003673.9E-13111122IPR001471AP2/ERF domain
CDDcd000181.55E-22118168No hitNo description
PRINTSPR003673.9E-13150170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MATEEEISTL KLMRQYLLGD ISDPFLTNLI PVKVEDSSPE LDLDSNSSEQ SNFCRFLEYF  60
DFEADKKPTD LTSHHNIQNS IATSPLKNSD LADPIVPVKK EVTCCYEARR YRGVRRRPWG  120
KFAAEIRDPK RKGSRVWLGT YDCEIDAAKA YDCAAFRMRG QKAVLNFPLE AGRSHPEPNT  180
SGRKRRRDCT ATVTTSTHVC HEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-27109169161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182186RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434617.11e-148PREDICTED: ethylene-responsive transcription factor ERF107
TrEMBLA0A0S3SP831e-151A0A0S3SP83_PHAAN; Uncharacterized protein
STRINGXP_007144191.11e-120(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-32ERF family protein