PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09170.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 162aa    MW: 18398.7 Da    PI: 9.3155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09170.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.91.1e-1768118255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp   + k  r++lg+++ + +Aaka++ a+ +++g
  Vang06g09170.2  68 RYRGVRRRP-WGKFAAEIRDP---KrKGSRVWLGTYDCEIDAAKAYDCAAFRMRG 118
                     7********.**********8...4334**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.2E-3068127IPR001471AP2/ERF domain
SMARTSM003802.0E-3468132IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2168128IPR016177DNA-binding domain
PfamPF008474.6E-1368118IPR001471AP2/ERF domain
PROSITE profilePS5103223.77568126IPR001471AP2/ERF domain
PRINTSPR003672.8E-136980IPR001471AP2/ERF domain
CDDcd000184.46E-2276126No hitNo description
PRINTSPR003672.8E-13108128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
LDSNSSEQSN FCRFLEYFDF EADKKPTDLT SHHNIQNSIA TSPLKNSDLA DPIVPVKKEV  60
TCCYEARRYR GVRRRPWGKF AAEIRDPKRK GSRVWLGTYD CEIDAAKAYD CAAFRMRGQK  120
AVLNFPLEAG RSHPEPNTSG RKRRRDCTAT VTTSTHVCHE K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2765127264ATERF1
3gcc_A4e-2765127264ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140144RKRRR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434617.11e-119PREDICTED: ethylene-responsive transcription factor ERF107
SwissprotQ9LY051e-37EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A0S3SP831e-118A0A0S3SP83_PHAAN; Uncharacterized protein
STRINGXP_007144191.13e-89(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-32ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]