PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g09200.6
Common NameLR48_Vigan09g105900
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 177aa    MW: 19848.2 Da    PI: 9.3761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g09200.6genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16.1e-201059356
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +kGVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+  l+ge
  Vang06g09200.6 10 FKGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAIAYDTAAYILRGE 59
                    8******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.39E-31868No hitNo description
Gene3DG3DSA:3.30.730.101.7E-31967IPR001471AP2/ERF domain
PROSITE profilePS5103222.049966IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23967IPR016177DNA-binding domain
SMARTSM003802.0E-33972IPR001471AP2/ERF domain
PfamPF008472.8E-121059IPR001471AP2/ERF domain
PRINTSPR003671.6E-101021IPR001471AP2/ERF domain
PRINTSPR003671.6E-103248IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKYGGRGKLF KGVRQRHWGK WVAEIRLPRN RTRVWLGTFD TAEDAAIAYD TAAYILRGEY  60
AQLNFPDLKH VIQANSLNGT TAALVEAKLQ AISQGVSSHR KPTDSPAGLS NKHTDENGKL  120
KSTNDKNSTM KEWQFDNTEK SKSIHHDISD VETFQLSRMP SLDMDSIWDE LLVSNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21666263ATERF1
3gcc_A2e-21666263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang06g09200.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435506.11e-129PREDICTED: ethylene-responsive transcription factor ERF062
SwissprotQ9SVQ01e-50ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLA0A0L9VBG01e-127A0A0L9VBG0_PHAAN; Uncharacterized protein
STRINGXP_007144182.11e-116(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-40ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]