PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang06g09570.1

Common Name

LR48_Vigan09g108400

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 176aa MW: 20074.5 Da PI: 5.7152

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang06g09570.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.1	1.1e-19	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Vang06g09570.1 22 KGPWTAEEDRLLIQYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-23	16	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.133	17	73	IPR017930	Myb domain
SMART	SM00717	3.9E-17	21	71	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-18	22	69	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	5.85E-23	23	96	IPR009057	Homeodomain-like
CDD	cd00167	3.68E-13	24	69	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.3E-7	73	96	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MYWGVMAGNM GWGMIEEQGW RKGPWTAEED RLLIQYVRLH GEGRWNSVAR LAGLKRNGKS 60 CRLRWVNYLR PDLKKGQITP QEESIIQELH ARWGNRVPST SQETQEMVNM CPNTSEQQGY 120 FYSMFNVSDN VSAPESSNEE ILWDGLWNLD DVLCNFNAAS ATSKTSLHNL VTPFS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-15	22	96	27	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang06g09570.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-134	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014513230.1	5e-65	transcription factor MYB2
TrEMBL	A0A0L9VBI7	2e-64	A0A0L9VBI7_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3SP86	2e-64	A0A0S3SP86_PHAAN; Uncharacterized protein
STRING	XP_007144143.1	2e-63	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1182	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	7e-50	myb domain protein 305

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]